TSS: Rfhg 102196.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001308305.2:0 ENST00000335367.7:2 BC044644:2 EU831533:94 EU831441:94 | |||
|annotation=promoter-TSS (NM_001308305) | |annotation=promoter-TSS (NM_001308305) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 | |gene_description=ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000133612 | |nearest_ensembl=ENSG00000133612 | ||
|nearest_promoter_id=NM_001308305 | |nearest_promoter_id=NM_001308305 | ||
|nearest_refseq=NM_031946 | |nearest_refseq=NM_031946 | ||
|nearest_transcripts=ENST00000335367.7:2 BC044644:2 EU831533:94 EU831441:94 | |||
|nearest_unigene=Hs.647075 | |nearest_unigene=Hs.647075 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=151114619 | |start=151114619 | ||
Latest revision as of 11:45, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4046929,EH38E2601221) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_001308305 |
| Entrez ID: | 116988 |
| Nearest Unigene: | Hs.647075 |
| Nearest Refseq: | NM_031946 |
| Nearest Ensembl: | ENSG00000133612 |
| Gene Name: | |
| Gene Alias: | AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 |
| Gene Type: | protein-coding |
| CpG%: | 0.087719 |
| GC%: | 0.706897 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |