TSS: Rfhg 102997.1: Difference between revisions

Latest revision as of 11:59, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_102997.1
TSS ID(Version3):	hg_91599.1
Species:	human
Chr:	chr8

Start:	2728417
End:	2728454
Strand:	-

Source datasets

FANTOM5|PRJNA401781

Protocol

CAGE|RAMPAGE|oligo_capping

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D4056168,EH38E2607110)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK128880:0
GeneID:	101927815
HGNC/MGI_ID:	HGNC:56149
UniProt_ID:
Nearer transcript ids and distances:	ENST00000520570.2:-8 ENST00000666066.1:31 ENST00000520842.6:-40 ENST00000671533.1:-123 view more...

Gene_name:	long intergenic non-protein coding RNA 3021
Gene_symbol:	LINC03021
Gene_synonyms:
Gene_source:	HGNC:56149

TATA-Box annotation

Distance to TSS:	16
Nearest PromoterID:	NR_125425
Entrez ID:	101927815
Nearest Unigene:	Hs.571467
Nearest Refseq:	NR_125423
Nearest Ensembl:	ENSG00000254319
Gene Name:	long intergenic non-protein coding RNA 3021
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.108108
GC%:	0.552632
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000654884.1:0 ENST00000659324.1:0 ENST00000655416.1:0 ENST00000519393.6:0 ENST00000523971.5:0 ENST00000517984.6:0 ENST00000517357.5:0 ENST00000658181.1:0 ENST00000665048.1:0 ENST00000654513.1:0 ENST00000664965.1:0 ENST00000655522.1:0 NR_125425.1:0 NR_125426.1:0 AK128880:0 ENST00000520570.2:-8 ENST00000666066.1:31 ENST00000520842.6:-40 ENST00000671533.1:-123
 |annotation=promoter-TSS (NR_125425)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=uncharacterized LOC101927815
 |gene_id=101927815
-|gene_name=LOC101927815
+|gene_name=long intergenic non-protein coding RNA 3021
 |gene_source=HGNC:56149
 |gene_symbol=LINC03021
@@ Line 21: / Line 22: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:56149
+|methods=CAGE{{!}}RAMPAGE{{!}}oligo_capping
 |nearest_ensembl=ENSG00000254319
 |nearest_promoter_id=NR_125425
 |nearest_refseq=NR_125423
+|nearest_transcripts=ENST00000520570.2:-8 ENST00000666066.1:31 ENST00000520842.6:-40 ENST00000671533.1:-123
 |nearest_unigene=Hs.571467
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA401781
 |species=human
 |start=2728417
@@ Line 32: / Line 36: @@
 |tata_box=
 |transcript_name=AK128880
+|tss_cluster_detected=4
 |tss_id=rfhg_102997.1
 |tss_id_v3=hg_91599.1