TSS: Rfhg 103457.1: Difference between revisions

Latest revision as of 15:39, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_103457.1
Species:	human
Chr:	chr8

Start:	11347483
End:	11347530
Strand:	-

Source datasets

PRJNA597322|PRJNA401781

Protocol

STRIPE-seq|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4061897,EH38E2610630)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	BC038546
Distance:	0
GeneID:	100129129
HGNC/MGI_ID:	HGNC:55510
UniProt_ID:

Gene_name:	LOC100129129
Gene_symbol:	TDH-AS1
Gene_synonyms:
Gene_source:	HGNC:55510

TATA-Box annotation

Distance to TSS:	10
Nearest PromoterID:	NR_147705
Entrez ID:	100129129
Nearest Unigene:	Hs.662094
Nearest Refseq:	NR_147705
Nearest Ensembl:	ENSG00000255020
Gene Name:	LOC100129129
Gene Alias:	-
Gene Description:	uncharacterized LOC100129129
Gene Type:	ncRNA
CpG%:	0.106383
GC%:	0.729167
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:55510
+|methods=STRIPE-seq{{!}}CAGE
 |nearest_ensembl=ENSG00000255020
 |nearest_promoter_id=NR_147705
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA597322{{!}}PRJNA401781
 |species=human
 |start=11347483
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=BC038546
-|tss_cluster_detected=3
+|tss_cluster_detected=2
 |tss_id=rfhg_103457.1
 |tss_score=1
 |uniprot_id=
 }}