TSS: Rfhg 103457.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:55510 | |hgnc_mgi_id=HGNC:55510 | ||
|methods=STRIPE-seq{{!}}CAGE | |||
|nearest_ensembl=ENSG00000255020 | |nearest_ensembl=ENSG00000255020 | ||
|nearest_promoter_id=NR_147705 | |nearest_promoter_id=NR_147705 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA597322{{!}}PRJNA401781 | |||
|species=human | |species=human | ||
|start=11347483 | |start=11347483 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=BC038546 | |transcript_name=BC038546 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_103457.1 | |tss_id=rfhg_103457.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} |
Latest revision as of 15:39, 6 December 2023
Basic information about the TSS
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Source datasets | PRJNA597322|PRJNA401781 | |||||||||||||
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Protocol | STRIPE-seq|CAGE | |||||||||||||
TSS cluster detected* | 2 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4061897,EH38E2610630) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 10 |
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Nearest PromoterID: | NR_147705 |
Entrez ID: | 100129129 |
Nearest Unigene: | Hs.662094 |
Nearest Refseq: | NR_147705 |
Nearest Ensembl: | ENSG00000255020 |
Gene Name: | LOC100129129 |
Gene Alias: | - |
Gene Description: | uncharacterized LOC100129129 |
Gene Type: | ncRNA |
CpG%: | 0.106383 |
GC%: | 0.729167 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.