TSS: Rfhg 1076.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11924 | |hgnc_mgi_id=HGNC:11924 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000049249 | |nearest_ensembl=ENSG00000049249 | ||
|nearest_promoter_id=NM_001561 | |nearest_promoter_id=NM_001561 | ||
Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914 | |||
|species=human | |species=human | ||
|start=7940813 | |start=7940813 |
Latest revision as of 16:57, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
Source datasets | FANTOM5|DRA000914 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | CAGE | |||||||||||||
TSS cluster detected* | 2 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS (EH38D2123011,EH38E1315570) |
---|---|
Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | 2328 |
---|---|
Nearest PromoterID: | NM_001561 |
Entrez ID: | 3604 |
Nearest Unigene: | Hs.86447 |
Nearest Refseq: | NM_001561 |
Nearest Ensembl: | ENSG00000049249 |
Gene Name: | TNFRSF9 |
Gene Alias: | 4-1BB|CD137|CDw137|ILA |
Gene Description: | TNF receptor superfamily member 9 |
Gene Type: | protein-coding |
CpG%: | 0.020408 |
GC%: | 0.540000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.