TSS: Rfhg 109203.1: Difference between revisions

Latest revision as of 13:56, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_109203.1
Species:	human
Chr:	chr8

Start:	100414478
End:	100414478
Strand:	-

Source datasets

DRA000914

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4126118,EH38E2651938)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000519844.2:-1
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LP896524:19 ENST00000657736.1:51 ENST00000654832.1:-66 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	31715
Nearest PromoterID:	NR_039681
Entrez ID:	100616451
Nearest Unigene:
Nearest Refseq:	NR_039681
Nearest Ensembl:	ENSG00000265599
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000519844.2:-1 LP896524:19 ENST00000657736.1:51 ENST00000654832.1:-66
 |annotation=Intergenic
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=microRNA 4471
 |gene_id=
-|gene_name=MIR4471
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000265599
 |nearest_promoter_id=NR_039681
 |nearest_refseq=NR_039681
+|nearest_transcripts=LP896524:19 ENST00000657736.1:51 ENST00000654832.1:-66
 |nearest_unigene=
 |peak_score=1
 |reftss_version=4
+|source_datasets=DRA000914
 |species=human
 |start=100414478