TSS: Rfhg 11299.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=intron (NR_125973, intron 2 of 3) | |annotation=intron (NR_125973, intron 2 of 3) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=long intergenic non-protein coding RNA 1762 | |gene_description=long intergenic non-protein coding RNA 1762 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000233154 | |nearest_ensembl=ENSG00000233154 | ||
|nearest_promoter_id=NR_125973 | |nearest_promoter_id=NR_125973 | ||
|nearest_refseq=NR_125972 | |nearest_refseq=NR_125972 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.668091 | |nearest_unigene=Hs.668091 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=116466230 | |start=116466230 | ||
Latest revision as of 15:07, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2215255,EH38E1379577) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 12589 |
|---|---|
| Nearest PromoterID: | NR_125973 |
| Entrez ID: | 101929023 |
| Nearest Unigene: | Hs.668091 |
| Nearest Refseq: | NR_125972 |
| Nearest Ensembl: | ENSG00000233154 |
| Gene Name: | |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |