TSS: Rfhg 113122.1: Difference between revisions

Latest revision as of 15:09, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_113122.1
Species:	human
Chr:	chr9

Start:	4741348
End:	4741382
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4167399,EH38E2679365)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000655730.1:359
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000663238.1:450

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-163
Nearest PromoterID:	NM_016282
Entrez ID:	50808
Nearest Unigene:	Hs.732022
Nearest Refseq:	NM_016282
Nearest Ensembl:	ENSG00000147853
Gene Name:
Gene Alias:	AK3L1\|AK6\|AKL3L\|AKL3L1\|FIX
Gene Type:	protein-coding
CpG%:	0.205882
GC%:	0.828571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000655730.1:359 ENST00000663238.1:450
 |annotation=promoter-TSS (NM_016282)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=adenylate kinase 3
 |gene_id=
-|gene_name=AK3
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000147853
 |nearest_promoter_id=NM_016282
 |nearest_refseq=NM_016282
+|nearest_transcripts=ENST00000663238.1:450
 |nearest_unigene=Hs.732022
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=4741348