TSS: Rfhg 113314.1: Difference between revisions

Latest revision as of 15:13, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_113314.1
Species:	human
Chr:	chr9

Start:	8351739
End:	8351743
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	CTCF-only,CTCF-bound (EH38D4170140,EH38E2681143)
Category:	CTCF-only

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	382205
Nearest PromoterID:	NM_130391
Entrez ID:	5789
Nearest Unigene:	Hs.446083
Nearest Refseq:	NM_002839
Nearest Ensembl:	ENSG00000153707
Gene Name:
Gene Alias:	HPTP\|HPTPD\|HPTPDELTA\|PTPD\|RPTPDELTA
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_130392, intron 24 of 30)
 |ccre_category=CTCF-only
@@ Line 15: / Line 16: @@
 |gene_description=protein tyrosine phosphatase receptor type D
 |gene_id=
-|gene_name=PTPRD
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000153707
 |nearest_promoter_id=NM_130391
 |nearest_refseq=NM_002839
+|nearest_transcripts=
 |nearest_unigene=Hs.446083
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=8351739