TSS: Rfhg 113597.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1862 | |hgnc_mgi_id=HGNC:1862 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl=ENSG00000147869 | |nearest_ensembl=ENSG00000147869 | ||
|nearest_promoter_id=NM_005454 | |nearest_promoter_id=NM_005454 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914 | |||
|species=human | |species=human | ||
|start=14722728 | |start=14722728 | ||
Latest revision as of 18:47, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5|EPD|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D4174161,EH38E2683412) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_005454 |
| Entrez ID: | 9350 |
| Nearest Unigene: | Hs.248204 |
| Nearest Refseq: | NM_005454 |
| Nearest Ensembl: | ENSG00000147869 |
| Gene Name: | CER1 |
| Gene Alias: | DAND4 |
| Gene Description: | cerberus 1, DAN family BMP antagonist |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.538462 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.