TSS: Rfhg 114315.1: Difference between revisions

Latest revision as of 19:00, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_114315.1
Species:	human
Chr:	chr9

Start:	32526175
End:	32526183
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4185364,EH38E2690005)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	AB385150
Distance:	8
GeneID:	23586
HGNC/MGI_ID:	HGNC:19102
UniProt_ID:

Gene_name:	DDX58
Gene_symbol:	RIGI
Gene_synonyms:	DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1
Gene_source:	HGNC:19102

TATA-Box annotation

Distance to TSS:	17
Nearest PromoterID:	NM_014314
Entrez ID:	23586
Nearest Unigene:	Hs.190622
Nearest Refseq:	NM_014314
Nearest Ensembl:	ENSG00000107201
Gene Name:	DDX58
Gene Alias:	RIG-I\|RIG1\|RIGI\|RLR-1\|SGMRT2
Gene Description:	DExD/H-box helicase 58
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:19102
+|methods=CAGE
 |nearest_ensembl=ENSG00000107201
 |nearest_promoter_id=NM_014314
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=32526175