TSS: Rfhg 114555.1: Difference between revisions

Latest revision as of 19:04, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_114555.1
Species:	human
Chr:	chr9

Start:	34329206
End:	34329282
Strand:	-

Source datasets

PRJDB5282|PRJNA4843412|DRA013844

Protocol

C1CAGE|NETCAGE|CAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4186865,EH38E2691070)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000402558.7 ENST00000684219.1 AK310014
Distance:	0
GeneID:	347240
HGNC/MGI_ID:	HGNC:19916
UniProt_ID:	Q5T7B8

Gene_name:	KIF24
Gene_symbol:	KIF24
Gene_synonyms:	FLJ10933 FLJ43884 bA571F15.4
Gene_source:	HGNC:19916

TATA-Box annotation

Distance to TSS:	24
Nearest PromoterID:	NM_194313
Entrez ID:	347240
Nearest Unigene:	Hs.710246
Nearest Refseq:	NM_194313
Nearest Ensembl:	ENSG00000186638
Gene Name:	KIF24
Gene Alias:	C9orf48\|bA571F15.4
Gene Description:	kinesin family member 24
Gene Type:	protein-coding
CpG%:	0.144737
GC%:	0.753247
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:19916
+|methods=C1CAGE{{!}}NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000186638
 |nearest_promoter_id=NM_194313
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=34329206
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000402558.7 ENST00000684219.1 AK310014
-|tss_cluster_detected=6
+|tss_cluster_detected=3
 |tss_id=rfhg_114555.1
 |tss_score=1
 |uniprot_id=Q5T7B8
 }}