TSS: Rfhg 114692.1: Difference between revisions

Latest revision as of 15:39, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_114692.1
Species:	human
Chr:	chr9

Start:	35096558
End:	35096640
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

8

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4187535,EH38E2691576)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000378617.4:0 ENST00000361778.6:0 ENST00000465745.6:0 ENST00000492770.1:0 AK074064:0
GeneID:	84720
HGNC/MGI_ID:	HGNC:23215
UniProt_ID:	Q8TEQ8
Nearer transcript ids and distances:	ENST00000474436.1:8 AK090433:8 AL833956:10 LF206427:-111 MA442004:-111 ENST00000472208.1:304 ENST00000298004.9:338 BC065282:338 view more...

Gene_name:	phosphatidylinositol glycan anchor biosynthesis class O
Gene_symbol:	PIGO
Gene_synonyms:	DKFZp434M222 FLJ00135 PIG-O
Gene_source:	HGNC:23215

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NM_152850
Entrez ID:	84720
Nearest Unigene:	Hs.522099
Nearest Refseq:	NM_032634
Nearest Ensembl:	ENSG00000165282
Gene Name:	phosphatidylinositol glycan anchor biosynthesis class O
Gene Alias:	HPMRS2
Gene Type:	protein-coding
CpG%:	0.109756
GC%:	0.710843
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000378617.4:0 ENST00000361778.6:0 ENST00000465745.6:0 ENST00000492770.1:0 NM_001201484.2:0 NM_032634.4:0 NM_152850.4:0 AK074064:0 ENST00000474436.1:8 AK090433:8 AL833956:10 LF206427:-111 MA442004:-111 ENST00000472208.1:304 ENST00000298004.9:338 BC065282:338
 |annotation=promoter-TSS (NM_152850)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=phosphatidylinositol glycan anchor biosynthesis class O
 |gene_id=84720
-|gene_name=PIGO
+|gene_name=phosphatidylinositol glycan anchor biosynthesis class O
 |gene_source=HGNC:23215
 |gene_symbol=PIGO
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:23215
+|methods=NETCAGE{{!}}CAGE{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}C1CAGE
 |nearest_ensembl=ENSG00000165282
 |nearest_promoter_id=NM_152850
 |nearest_refseq=NM_032634
+|nearest_transcripts=ENST00000474436.1:8 AK090433:8 AL833956:10 LF206427:-111 MA442004:-111 ENST00000472208.1:304 ENST00000298004.9:338 BC065282:338
 |nearest_unigene=Hs.522099
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJDB5282
 |species=human
 |start=35096558
@@ Line 32: / Line 36: @@
 |tata_box=
 |transcript_name=ENST00000378617.4 ENST00000361778.6 ENST00000465745.6 ENST00000492770.1 AK074064
-|tss_cluster_detected=10
+|tss_cluster_detected=8
 |tss_id=rfhg_114692.1
 |tss_score=1
 |uniprot_id=Q8TEQ8
 }}