TSS: Rfhg 114700.1: Difference between revisions
From referenceTSS
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25666 | |hgnc_mgi_id=HGNC:25666 | ||
|methods=CAGE{{!}}NETCAGE | |||
|nearest_ensembl=ENSG00000005238 | |nearest_ensembl=ENSG00000005238 | ||
|nearest_promoter_id=NM_001317991 | |nearest_promoter_id=NM_001317991 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA013844{{!}}PRJNA4843412 | |||
|species=human | |species=human | ||
|start=35111543 | |start=35111543 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000603301.5 ENST00000378561.5 AB040972 | |transcript_name=ENST00000603301.5 ENST00000378561.5 AB040972 | ||
|tss_cluster_detected=3 | |||
|tss_id=rfhg_114700.1 | |tss_id=rfhg_114700.1 | ||
|tss_id_v3=hg_100573.1;hg_100574.1 | |tss_id_v3=hg_100573.1;hg_100574.1 |
Latest revision as of 19:07, 6 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|DRA013844|PRJNA4843412 | |||||||||||||||
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Protocol | CAGE|NETCAGE | |||||||||||||||
TSS cluster detected* | 3 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4187556,EH38E2691592) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -121 |
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Nearest PromoterID: | NM_001317991 |
Entrez ID: | 80256 |
Nearest Unigene: | Hs.301696 |
Nearest Refseq: | NM_025182 |
Nearest Ensembl: | ENSG00000005238 |
Gene Name: | FAM214B |
Gene Alias: | KIAA1539 |
Gene Description: | family with sequence similarity 214 member B |
Gene Type: | protein-coding |
CpG%: | 0.033333 |
GC%: | 0.672131 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.