TSS: Rfhg 114896.1: Difference between revisions
From referenceTSS
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:30762 | |hgnc_mgi_id=HGNC:30762 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000204930 | |nearest_ensembl=ENSG00000204930 | ||
|nearest_promoter_id=NM_001012446 | |nearest_promoter_id=NM_001012446 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=35828727 | |start=35828727 |
Latest revision as of 19:11, 6 December 2023
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4188206,EH38E2692087) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 0 |
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Nearest PromoterID: | NM_001012446 |
Entrez ID: | 392307 |
Nearest Unigene: | Hs.128075 |
Nearest Refseq: | NM_001012446 |
Nearest Ensembl: | ENSG00000204930 |
Gene Name: | FAM221B |
Gene Alias: | C9orf128 |
Gene Description: | family with sequence similarity 221 member B |
Gene Type: | protein-coding |
CpG%: | 0.000000 |
GC%: | 0.454545 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.