TSS: Rfhg 115580.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF211276:120 MA446853:120
|annotation=promoter-TSS (NM_006007)
|annotation=promoter-TSS (NM_006007)
|ccre_category=pELS
|ccre_category=pELS
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|gene_description=zinc finger AN1-type containing 5
|gene_description=zinc finger AN1-type containing 5
|gene_id=
|gene_id=
|gene_name=ZFAND5
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000107372
|nearest_ensembl=ENSG00000107372
|nearest_promoter_id=NM_001102420
|nearest_promoter_id=NM_001102420
|nearest_refseq=NM_006007
|nearest_refseq=NM_006007
|nearest_transcripts=
|nearest_unigene=Hs.406096
|nearest_unigene=Hs.406096
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=72365772
|start=72365772

Latest revision as of 15:55, 13 March 2025

Basic information about the TSS


TSS ID:rfhg_115580.1
Species:human
Chr:chr9
Start:72365772
End:72365785
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS,CTCF-bound (EH38D4195241,EH38E2696748)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF211276:120
MA446853:120
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-570
    Nearest PromoterID:NM_001102420
    Entrez ID:7763
    Nearest Unigene:Hs.406096
    Nearest Refseq:NM_006007
    Nearest Ensembl:ENSG00000107372
    Gene Name:
    Gene Alias:ZA20D2|ZFAND5A|ZNF216
    Gene Type:protein-coding
    CpG%:0.076923
    GC%:0.642857
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):