TSS: Rfhg 115580.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF211276:120 MA446853:120 | |||
|annotation=promoter-TSS (NM_006007) | |annotation=promoter-TSS (NM_006007) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
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|gene_description=zinc finger AN1-type containing 5 | |gene_description=zinc finger AN1-type containing 5 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000107372 | |nearest_ensembl=ENSG00000107372 | ||
|nearest_promoter_id=NM_001102420 | |nearest_promoter_id=NM_001102420 | ||
|nearest_refseq=NM_006007 | |nearest_refseq=NM_006007 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.406096 | |nearest_unigene=Hs.406096 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=72365772 | |start=72365772 |
Latest revision as of 15:55, 13 March 2025
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | pELS,CTCF-bound (EH38D4195241,EH38E2696748) |
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Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -570 |
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Nearest PromoterID: | NM_001102420 |
Entrez ID: | 7763 |
Nearest Unigene: | Hs.406096 |
Nearest Refseq: | NM_006007 |
Nearest Ensembl: | ENSG00000107372 |
Gene Name: | |
Gene Alias: | ZA20D2|ZFAND5A|ZNF216 |
Gene Type: | protein-coding |
CpG%: | 0.076923 |
GC%: | 0.642857 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |