TSS: Rfhg 115640.1: Difference between revisions

Latest revision as of 15:55, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_115640.1
Species:	human
Chr:	chr9

Start:	72942323
End:	72942417
Strand:	-

Source datasets

PRJNA548673

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4195725,EH38E2697104)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	10683
Nearest PromoterID:	NM_000689
Entrez ID:	216
Nearest Unigene:	Hs.76392
Nearest Refseq:	NM_000689
Nearest Ensembl:	ENSG00000165092
Gene Name:
Gene Alias:	ALDC\|ALDH-E1\|ALDH1\|ALDH11\|HEL-9\|HEL-S-53e\|HEL12\|PUMB1\|RALDH1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.473684
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_000689, intron 1 of 12)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=aldehyde dehydrogenase 1 family member A1
 |gene_id=
-|gene_name=ALDH1A1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000165092
 |nearest_promoter_id=NM_000689
 |nearest_refseq=NM_000689
+|nearest_transcripts=
 |nearest_unigene=Hs.76392
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA548673
 |species=human
 |start=72942323