TSS: Rfhg 116034.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=intron (NM_174938, intron 1 of 13) | |annotation=intron (NM_174938, intron 1 of 13) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
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|gene_description=FERM domain containing 3 | |gene_description=FERM domain containing 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=C1CAGE | |||
|nearest_ensembl=ENSG00000172159 | |nearest_ensembl=ENSG00000172159 | ||
|nearest_promoter_id=NM_001244960 | |nearest_promoter_id=NM_001244960 | ||
|nearest_refseq=NM_174938 | |nearest_refseq=NM_174938 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.127535 | |nearest_unigene=Hs.127535 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB5282 | |||
|species=human | |species=human | ||
|start=83434647 | |start=83434647 |
Latest revision as of 16:02, 13 March 2025
Basic information about the TSS
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Source datasets | PRJDB5282 | |||||||||||||
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Protocol | C1CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | dELS (EH38D4203548,EH38E2701960) |
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Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 33095 |
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Nearest PromoterID: | NM_001244960 |
Entrez ID: | 257019 |
Nearest Unigene: | Hs.127535 |
Nearest Refseq: | NM_174938 |
Nearest Ensembl: | ENSG00000172159 |
Gene Name: | |
Gene Alias: | 4.1O|EPB41L4O|EPB41LO|P410 |
Gene Type: | protein-coding |
CpG%: | 0.000000 |
GC%: | 1.000000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |