TSS: Rfhg 11623.1: Difference between revisions

Latest revision as of 16:06, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_11623.1
Species:	human
Chr:	chr1

Start:	144437040
End:	144437040
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK299360:-19
GeneID:	284565
HGNC/MGI_ID:	HGNC:28791
UniProt_ID:	B4DRP3
Nearer transcript ids and distances:

Gene_name:	NBPF member 15
Gene_symbol:	NBPF15
Gene_synonyms:	MGC8902
Gene_source:	HGNC:28791

TATA-Box annotation

Distance to TSS:	19765
Nearest PromoterID:	NM_173638
Entrez ID:	284565
Nearest Unigene:	Hs.523572
Nearest Refseq:	NM_173638
Nearest Ensembl:	ENSG00000266338
Gene Name:	NBPF member 15
Gene Alias:	AB14\|AG3\|NBPF16
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK299360:-19
 |annotation=exon (NM_001170755, exon 10 of 22)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=NBPF member 15
 |gene_id=284565
-|gene_name=NBPF15
+|gene_name=NBPF member 15
 |gene_source=HGNC:28791
 |gene_symbol=NBPF15
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:28791
+|methods=TSS_database
 |nearest_ensembl=ENSG00000266338
 |nearest_promoter_id=NM_173638
 |nearest_refseq=NM_173638
+|nearest_transcripts=
 |nearest_unigene=Hs.523572
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=144437040