TSS: Rfhg 116738.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17208 | |hgnc_mgi_id=HGNC:17208 | ||
|methods=CAGE{{!}}TSS_database{{!}}C1CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}NETCAGE | |||
|nearest_ensembl=ENSG00000185963 | |nearest_ensembl=ENSG00000185963 | ||
|nearest_promoter_id=NM_015250 | |nearest_promoter_id=NM_015250 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}PRJDB5282{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=92764603 | |start=92764603 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000375512.3 ENST00000356884.11 BC073970 AB014599 AY052562 | |transcript_name=ENST00000375512.3 ENST00000356884.11 BC073970 AB014599 AY052562 | ||
|tss_cluster_detected=8 | |||
|tss_id=rfhg_116738.1 | |tss_id=rfhg_116738.1 | ||
|tss_id_v3=hg_101453.1;hg_101454.1 | |tss_id_v3=hg_101453.1;hg_101454.1 | ||
Latest revision as of 19:42, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|PRJDB5282|PRJNA548673|PRJNA615891|PRJNA401781 |PRJNA4843412|DRA013844 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|C1CAGE|ReCappable-seq|SLIC_CAGE|NETCAGE | |||||||||||||||
| TSS cluster detected* | 8 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4211879,EH38E2707797) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 93 |
|---|---|
| Nearest PromoterID: | NM_015250 |
| Entrez ID: | 23299 |
| Nearest Unigene: | Hs.436939 |
| Nearest Refseq: | NM_015250 |
| Nearest Ensembl: | ENSG00000185963 |
| Gene Name: | BICD2 |
| Gene Alias: | SMALED2|SMALED2A|SMALED2B|bA526D8.1 |
| Gene Description: | BICD cargo adaptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.153285 |
| GC%: | 0.778182 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.