TSS: Rfhg 117125.1: Difference between revisions

Latest revision as of 19:50, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_117125.1
Species:	human
Chr:	chr9

Start:	96778054
End:	96778106
Strand:	-

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4215681,EH38E2710576)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000223428.9 ENST00000375231.5 AK292600 BC036676 BC068587 BC058022
Distance:	0
GeneID:	22869
HGNC/MGI_ID:	HGNC:29161
UniProt_ID:	Q9Y2H8

Gene_name:	ZNF510
Gene_symbol:	ZNF510
Gene_synonyms:	KIAA0972
Gene_source:	HGNC:29161

TATA-Box annotation

Distance to TSS:	7
Nearest PromoterID:	NM_001314059
Entrez ID:	22869
Nearest Unigene:	Hs.75264
Nearest Refseq:	NM_014930
Nearest Ensembl:	ENSG00000081386
Gene Name:	ZNF510
Gene Alias:	-
Gene Description:	zinc finger protein 510
Gene Type:	protein-coding
CpG%:	0.038462
GC%:	0.547170
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:29161
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000081386
 |nearest_promoter_id=NM_001314059
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=96778054
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000223428.9 ENST00000375231.5 AK292600 BC036676 BC068587 BC058022
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfhg_117125.1
 |tss_score=1
 |uniprot_id=Q9Y2H8
 }}