TSS: Rfhg 117140.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:2538 | |hgnc_mgi_id=HGNC:2538 | ||
|methods=TSS_database | |||
|nearest_ensembl=ENSG00000136943 | |nearest_ensembl=ENSG00000136943 | ||
|nearest_promoter_id=NM_001201575 | |nearest_promoter_id=NM_001201575 | ||
Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start=97039658 | |start=97039658 |
Latest revision as of 19:50, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
Source datasets | EPD | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | TSS_database | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4215794,EH38E2710648) |
---|---|
Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -15 |
---|---|
Nearest PromoterID: | NM_001201575 |
Entrez ID: | 1515 |
Nearest Unigene: | Hs.610096 |
Nearest Refseq: | NM_001333 |
Nearest Ensembl: | ENSG00000136943 |
Gene Name: | CTSV |
Gene Alias: | CATL2|CTSL2|CTSU |
Gene Description: | cathepsin V |
Gene Type: | protein-coding |
CpG%: | 0.000000 |
GC%: | 0.000000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.