TSS: Rfhg 119810.1: Difference between revisions

Latest revision as of 17:13, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_119810.1
Species:	human
Chr:	chr9

Start:	128419197
End:	128419216
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4242803,EH38E2729586)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001286760.1:-37
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000447915.5:-83 AK314294:-83 ENST00000420512.5:391 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	46
Nearest PromoterID:	NM_001286760
Entrez ID:	51148
Nearest Unigene:	Hs.495230
Nearest Refseq:	NM_016174
Nearest Ensembl:	ENSG00000167123
Gene Name:
Gene Alias:	CEECAM1\|GLT25D3
Gene Type:	protein-coding
CpG%:	0.052632
GC%:	0.700000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001286760.1:-37 ENST00000447915.5:-83 AK314294:-83 ENST00000420512.5:391
 |annotation=promoter-TSS (NM_001286760)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=cerebral endothelial cell adhesion molecule
 |gene_id=
-|gene_name=CERCAM
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000167123
 |nearest_promoter_id=NM_001286760
 |nearest_refseq=NM_016174
+|nearest_transcripts=ENST00000447915.5:-83 AK314294:-83 ENST00000420512.5:391
 |nearest_unigene=Hs.495230
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=128419197