TSS: Rfhg 121631.1: Difference between revisions

Latest revision as of 17:47, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_121631.1
Species:	human
Chr:	chr9

Start:	137230837
End:	137230837
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D4253436,EH38E2737721)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000673835.1:64
GeneID:	142680
HGNC/MGI_ID:	HGNC:20305
UniProt_ID:	Q8N130
Nearer transcript ids and distances:	ENST00000673865.1:-80 ENST00000538474.5:-80 NM_001177317.2:-80 BC029942:-80 AB055000:88 ENST00000673953.1:96 ENST00000361134.2:96 NM_080877.3:96 AK095999:96 view more...

Gene_name:	solute carrier family 34 member 3
Gene_symbol:	SLC34A3
Gene_synonyms:	FLJ38680 NPTIIc
Gene_source:	HGNC:20305

TATA-Box annotation

Distance to TSS:	80
Nearest PromoterID:	NM_001177317
Entrez ID:	142680
Nearest Unigene:	Hs.432442
Nearest Refseq:	NM_080877
Nearest Ensembl:	ENSG00000198569
Gene Name:	solute carrier family 34 member 3
Gene Alias:	HHRH\|NPTIIc
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000673835.1:64 NM_001177316.2:64 ENST00000673865.1:-80 ENST00000538474.5:-80 NM_001177317.2:-80 BC029942:-80 AB055000:88 ENST00000673953.1:96 ENST00000361134.2:96 NM_080877.3:96 AK095999:96
 |annotation=promoter-TSS (NM_080877)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=solute carrier family 34 member 3
 |gene_id=142680
-|gene_name=SLC34A3
+|gene_name=solute carrier family 34 member 3
 |gene_source=HGNC:20305
 |gene_symbol=SLC34A3
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:20305
+|methods=TSS_database
 |nearest_ensembl=ENSG00000198569
 |nearest_promoter_id=NM_001177317
 |nearest_refseq=NM_080877
+|nearest_transcripts=ENST00000673865.1:-80 ENST00000538474.5:-80 NM_001177317.2:-80 BC029942:-80 AB055000:88 ENST00000673953.1:96 ENST00000361134.2:96 NM_080877.3:96 AK095999:96
 |nearest_unigene=Hs.432442
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=137230837