TSS: Hg 101896.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|PTPH1= | |||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=NA | |||
|distance_to_tss=-3696 | |distance_to_tss=-3696 | ||
|end=109421490 | |||
|end_of_center_position=109421480 | |||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=PTP-H1 | |gene_alias=PTP-H1{{!}}PTPH1 | ||
|gene_description= | |gene_description=protein tyrosine phosphatase non-receptor type 3 | ||
|gene_name=PTPN3 | |gene_name=PTPN3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=109421468 | |||
|start_of_center_position=109421479 | |||
|strand=- | |||
|tata_box=-38(GGCTATTTATAG,-,0.00),-36(CTATTTATAGGT,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101896.1 | |tss_id=hg_101896.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:50, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -3696 |
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| Nearest PromoterID: | NR_026918 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | PTPN3 |
| Gene Alias: | PTP-H1|PTPH1 |
| Gene Description: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -38(GGCTATTTATAG,-,0.00),-36(CTATTTATAGGT,+,0.00) |