TSS: Rfhg 125334.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000638282.1:-27 ENST00000640822.1:-156 | |||
|annotation=intron (NM_001142929, intron 7 of 14) | |annotation=intron (NM_001142929, intron 7 of 14) | ||
|ccre_category=DNase-H3K4me3 | |ccre_category=DNase-H3K4me3 | ||
| Line 15: | Line 16: | ||
|gene_description=choline O-acetyltransferase | |gene_description=choline O-acetyltransferase | ||
|gene_id=1103 | |gene_id=1103 | ||
|gene_name= | |gene_name=choline O-acetyltransferase | ||
|gene_source=HGNC:1912 | |gene_source=HGNC:1912 | ||
|gene_symbol=CHAT | |gene_symbol=CHAT | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1912 | |hgnc_mgi_id=HGNC:1912 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000070748 | |nearest_ensembl=ENSG00000070748 | ||
|nearest_promoter_id=NM_001142933 | |nearest_promoter_id=NM_001142933 | ||
|nearest_refseq=NM_020549 | |nearest_refseq=NM_020549 | ||
|nearest_transcripts=ENST00000640822.1:-156 | |||
|nearest_unigene=Hs.302002 | |nearest_unigene=Hs.302002 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=49637556 | |start=49637556 | ||
Latest revision as of 18:55, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | DNase-H3K4me3 (EH38D2342319,EH38E1467044) |
|---|---|
| Category: | DNase-H3K4me3 |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 23519 |
|---|---|
| Nearest PromoterID: | NM_001142933 |
| Entrez ID: | 1103 |
| Nearest Unigene: | Hs.302002 |
| Nearest Refseq: | NM_020549 |
| Nearest Ensembl: | ENSG00000070748 |
| Gene Name: | choline O-acetyltransferase |
| Gene Alias: | CHOACTASE|CMS1A|CMS1A2|CMS6 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.