TSS: Rfhg 126054.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=dELS | |ccre_category=dELS | ||
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|gene_description=jumonji domain containing 1C | |gene_description=jumonji domain containing 1C | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=STRIPE-seq | |||
|nearest_ensembl=ENSG00000171988 | |nearest_ensembl=ENSG00000171988 | ||
|nearest_promoter_id=NM_001318154 | |nearest_promoter_id=NM_001318154 | ||
|nearest_refseq=NM_004241 | |nearest_refseq=NM_004241 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.413416 | |nearest_unigene=Hs.413416 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA597322 | |||
|species=human | |species=human | ||
|start=63641887 | |start=63641887 | ||
Latest revision as of 19:08, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJNA597322 | |||||||||||||
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| Protocol | STRIPE-seq | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2352217,EH38E1473100) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -120000 |
|---|---|
| Nearest PromoterID: | NM_001318154 |
| Entrez ID: | 221037 |
| Nearest Unigene: | Hs.413416 |
| Nearest Refseq: | NM_004241 |
| Nearest Ensembl: | ENSG00000171988 |
| Gene Name: | |
| Gene Alias: | KDM3C|TRIP-8|TRIP8 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.625000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |