TSS: Rfhg 1265.1: Difference between revisions

Latest revision as of 22:41, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_1265.1
Species:	human
Chr:	chr1

Start:	9026387
End:	9026426
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2124311,EH38E1316698)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000400906.2
Distance:	0
GeneID:	155184
HGNC/MGI_ID:	HGNC:13445
UniProt_ID:	Q6PXP3

Gene_name:	SLC2A7
Gene_symbol:	SLC2A7
Gene_synonyms:	GLUT7
Gene_source:	HGNC:13445

TATA-Box annotation

Distance to TSS:	-61
Nearest PromoterID:	NM_207420
Entrez ID:	155184
Nearest Unigene:	Hs.531239
Nearest Refseq:	NM_207420
Nearest Ensembl:	ENSG00000197241
Gene Name:	SLC2A7
Gene Alias:	GLUT-7\|GLUT7
Gene Description:	solute carrier family 2 member 7
Gene Type:	protein-coding
CpG%:	0.051282
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:13445
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000197241
 |nearest_promoter_id=NM_207420
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=9026387