TSS: Rfhg 126930.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000580790.1:0 ENST00000584747.5:0 NR_160427.1:0 NR_160425.1:0 NR_160426.1:0 NR_026592.2:0 BC063124:0 BC099910:0 BC046139:0 AK294783:0 ENST00000399449.3:1 BC020053:1 | |||
|annotation=promoter-TSS (NR_026592) | |annotation=promoter-TSS (NR_026592) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=BMS1P4-AGAP5 readthough | |gene_description=BMS1P4-AGAP5 readthough | ||
|gene_id=729096 | |gene_id=729096 | ||
|gene_name= | |gene_name=BMS1 pseudogene 4 | ||
|gene_source=HGNC:23652 | |gene_source=HGNC:23652 | ||
|gene_symbol=BMS1P4 | |gene_symbol=BMS1P4 | ||
| Line 21: | Line 22: | ||
|gene_type=pseudo | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:23652 | |hgnc_mgi_id=HGNC:23652 | ||
|methods=CAGE{{!}}RAMPAGE{{!}}TIF-seq2{{!}}NETCAGE{{!}}STRIPE-seq{{!}}SLIC_CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}C1CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_160426 | |nearest_promoter_id=NR_160426 | ||
|nearest_refseq=NR_160425 | |nearest_refseq=NR_160425 | ||
|nearest_transcripts=ENST00000399449.3:1 BC020053:1 | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}ENCODE{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJNA548673{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start=73730467 | |start=73730467 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000584747.5 BC063124 BC099910 BC046139 AK294783 | |transcript_name=ENST00000584747.5 BC063124 BC099910 BC046139 AK294783 | ||
|tss_cluster_detected=13 | |||
|tss_id=rfhg_126930.1 | |tss_id=rfhg_126930.1 | ||
|tss_id_v3=hg_110106.1 | |tss_id_v3=hg_110106.1 | ||
Latest revision as of 19:24, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|ENCODE|PRJNA401781|PRJNA615891|PRJNA4843412 |DRA013844|PRJNA597322|PRJNA548673|PRJDB5282 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|TIF-seq2|NETCAGE|STRIPE-seq|SLIC_CAGE |oligo_capping|ReCappable-seq|C1CAGE | |||||||||||||||
| TSS cluster detected* | 13 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2360097,EH38E1478429) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NR_160426 |
| Entrez ID: | 113939925 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_160425 |
| Nearest Ensembl: | |
| Gene Name: | BMS1 pseudogene 4 |
| Gene Alias: | - |
| Gene Type: | pseudo |
| CpG%: | 0.078431 |
| GC%: | 0.538462 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.