TSS: Rfhg 127017.1: Difference between revisions

Latest revision as of 19:25, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_127017.1
Species:	human
Chr:	chr10

Start:	74105121
End:	74105284
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2360530,EH38E1478807)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC013847:30
GeneID:	7414
HGNC/MGI_ID:	HGNC:12665
UniProt_ID:
Nearer transcript ids and distances:	ENST00000472585.1:-193

Gene_name:	vinculin
Gene_symbol:	VCL
Gene_synonyms:
Gene_source:	HGNC:12665

TATA-Box annotation

Distance to TSS:	45626
Nearest PromoterID:	NM_012095
Entrez ID:	26985
Nearest Unigene:	Hs.500104
Nearest Refseq:	NM_012095
Nearest Ensembl:	ENSG00000185009
Gene Name:	vinculin
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.030675
GC%:	0.567073
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=BC013847:30 ENST00000472585.1:-193
 |annotation=exon (NM_003373, exon 16 of 21)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=adaptor related protein complex 3 subunit mu 1
 |gene_id=7414
-|gene_name=AP3M1
+|gene_name=vinculin
 |gene_source=HGNC:12665
 |gene_symbol=VCL
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:12665
+|methods=C1CAGE
 |nearest_ensembl=ENSG00000185009
 |nearest_promoter_id=NM_012095
 |nearest_refseq=NM_012095
+|nearest_transcripts=ENST00000472585.1:-193
 |nearest_unigene=Hs.500104
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282
 |species=human
 |start=74105121