TSS: Rfhg 13098.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=KJ902185:-14 BC029792:-37 ENST00000624995.4:-54 NM_001317929.4:-54 NM_024330.4:-54 NR_145826.3:-54 AK027499:-70 DQ893429:-104 DQ895951:-104 KJ893196:-104 LF206199:-115 MA441776:-115 ENST00000468403.1:-142 AK074134:-142 AY358409:-145 ENST00000484014.5:-148 AK123997:-148 AK075377:-162 BC003041:-169 BC009916:-169 ENST00000483574.6:275 LF352380:354 MA587957:354 AJ577572:-459 | |||
|annotation=promoter-TSS (NR_145826) | |annotation=promoter-TSS (NR_145826) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=solute carrier family 27 member 3 | |gene_description=solute carrier family 27 member 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000143554 | |nearest_ensembl=ENSG00000143554 | ||
|nearest_promoter_id=NM_024330 | |nearest_promoter_id=NM_024330 | ||
|nearest_refseq=NM_024330 | |nearest_refseq=NM_024330 | ||
|nearest_transcripts=BC029792:-37 ENST00000624995.4:-54 NM_001317929.4:-54 NM_024330.4:-54 NR_145826.3:-54 AK027499:-70 DQ893429:-104 DQ895951:-104 KJ893196:-104 LF206199:-115 MA441776:-115 ENST00000468403.1:-142 AK074134:-142 AY358409:-145 ENST00000484014.5:-148 AK123997:-148 AK075377:-162 BC003041:-169 BC009916:-169 ENST00000483574.6:275 LF352380:354 MA587957:354 AJ577572:-459 | |||
|nearest_unigene=Hs.438723 | |nearest_unigene=Hs.438723 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=153775461 | |start=153775461 | ||
Latest revision as of 20:39, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2223949,EH38E1385712) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 61 |
|---|---|
| Nearest PromoterID: | NM_024330 |
| Entrez ID: | 11000 |
| Nearest Unigene: | Hs.438723 |
| Nearest Refseq: | NM_024330 |
| Nearest Ensembl: | ENSG00000143554 |
| Gene Name: | |
| Gene Alias: | ACSVL3|FATP3|VLCS-3 |
| Gene Type: | protein-coding |
| CpG%: | 0.071429 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "BC029792:-37 ENST00000624995.4:-54 NM_001317929.4:-54 NM_024330.4:-54 NR_145826.3:-54 AK027499:-70 DQ893429:-104 DQ895951:-104 KJ893196:-104 LF206199:-115 MA441776:-115 ENST00000468403.1:-142 AK074134:-142 AY358409:-145 ENST00000484014.5:-148 AK123997:-148 AK075377:-162 BC003041:-169 BC009916:-169 ENST00000483574.6:275 LF352380:354 MA587957:354 AJ577572:-459" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.