TSS: Rfhg 132251.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000530666.1:479 | |||
|annotation=exon (NM_006755, exon 5 of 8) | |annotation=exon (NM_006755, exon 5 of 8) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description=glutamine amidotransferase like class 1 domain containing 1 | |gene_description=glutamine amidotransferase like class 1 domain containing 1 | ||
|gene_id=6888 | |gene_id=6888 | ||
|gene_name= | |gene_name=transaldolase 1 | ||
|gene_source=HGNC:11559 | |gene_source=HGNC:11559 | ||
|gene_symbol=TALDO1 | |gene_symbol=TALDO1 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11559 | |hgnc_mgi_id=HGNC:11559 | ||
|methods=oligo_capping | |||
|nearest_ensembl=ENSG00000177225 | |nearest_ensembl=ENSG00000177225 | ||
|nearest_promoter_id=NM_001318822 | |nearest_promoter_id=NM_001318822 | ||
|nearest_refseq=NM_182612 | |nearest_refseq=NM_182612 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.218362 | |nearest_unigene=Hs.218362 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781 | |||
|species=human | |species=human | ||
|start=763499 | |start=763499 | ||
Latest revision as of 21:02, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJNA401781 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | oligo_capping | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 13986 |
|---|---|
| Nearest PromoterID: | NM_001318822 |
| Entrez ID: | 347862 |
| Nearest Unigene: | Hs.218362 |
| Nearest Refseq: | NM_182612 |
| Nearest Ensembl: | ENSG00000177225 |
| Gene Name: | transaldolase 1 |
| Gene Alias: | PDDC1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.