TSS: Rfhg 13446.1: Difference between revisions

Latest revision as of 21:46, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_13446.1
Species:	human
Chr:	chr1

Start:	155016265
End:	155016470
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2225190,EH38E1386744)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	MN308994:-129
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	13737
Nearest PromoterID:	NR_046206
Entrez ID:	51043
Nearest Unigene:	Hs.729279
Nearest Refseq:	NM_001252406
Nearest Ensembl:	ENSG00000160685
Gene Name:
Gene Alias:	CKROX\|THPOK\|ZBTB15\|ZFP-67\|ZFP67\|ZNF857B\|c-KROX\|hcKROX
Gene Type:	protein-coding
CpG%:	0.058537
GC%:	0.650485
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=MN308994:-129
 |annotation=exon (NM_001256455, exon 3 of 3)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=zinc finger and BTB domain containing 7B
 |gene_id=
-|gene_name=ZBTB7B
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=C1CAGE
 |nearest_ensembl=ENSG00000160685
 |nearest_promoter_id=NR_046206
 |nearest_refseq=NM_001252406
+|nearest_transcripts=
 |nearest_unigene=Hs.729279
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282
 |species=human
 |start=155016265