TSS: Rfhg 135321.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_170731.5:0 ENST00000314915.6:-24 EF689021:-24 AY054392:273 AB038670:294 AY442188:464 | |||
|annotation=promoter-TSS (NM_170731) | |annotation=promoter-TSS (NM_170731) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=brain derived neurotrophic factor | |gene_description=brain derived neurotrophic factor | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl=ENSG00000176697 | |nearest_ensembl=ENSG00000176697 | ||
|nearest_promoter_id=NM_170731 | |nearest_promoter_id=NM_170731 | ||
|nearest_refseq=NM_001709 | |nearest_refseq=NM_001709 | ||
|nearest_transcripts=ENST00000314915.6:-24 EF689021:-24 AY054392:273 AB038670:294 AY442188:464 | |||
|nearest_unigene=Hs.502182 | |nearest_unigene=Hs.502182 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start=27722022 | |start=27722022 | ||
Latest revision as of 22:04, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2435529,EH38E1528851) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_170731 |
| Entrez ID: | 627 |
| Nearest Unigene: | Hs.502182 |
| Nearest Refseq: | NM_001709 |
| Nearest Ensembl: | ENSG00000176697 |
| Gene Name: | |
| Gene Alias: | ANON2|BULN2 |
| Gene Type: | protein-coding |
| CpG%: | 0.083333 |
| GC%: | 0.461538 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |