TSS: Rfhg 136027.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000315571.6:0 ENST00000532490.1:0 NM_001304263.2:0 NM_001304264.2:0 NM_174902.4:0 AK293930:0 AK299186:0 AK075546:0 BC042754:0 ENST00000528989.5:-50 ENST00000524419.5:-50 BC136286:-50 BC143823:-50 BC143824:-50 | |||
|annotation=promoter-TSS (NM_174902) | |annotation=promoter-TSS (NM_174902) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=low density lipoprotein receptor class A domain containing 3 | |gene_description=low density lipoprotein receptor class A domain containing 3 | ||
|gene_id=143458 | |gene_id=143458 | ||
|gene_name= | |gene_name=low density lipoprotein receptor class A domain containing 3 | ||
|gene_source=HGNC:27046 | |gene_source=HGNC:27046 | ||
|gene_symbol=LDLRAD3 | |gene_symbol=LDLRAD3 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:27046 | |hgnc_mgi_id=HGNC:27046 | ||
|methods=C1CAGE{{!}}NETCAGE{{!}}CAGE{{!}}SLIC_CAGE | |||
|nearest_ensembl=ENSG00000179241 | |nearest_ensembl=ENSG00000179241 | ||
|nearest_promoter_id=NM_174902 | |nearest_promoter_id=NM_174902 | ||
|nearest_refseq=NM_174902 | |nearest_refseq=NM_174902 | ||
|nearest_transcripts=ENST00000528989.5:-50 ENST00000524419.5:-50 BC136286:-50 BC143823:-50 BC143824:-50 | |||
|nearest_unigene=Hs.745134 | |nearest_unigene=Hs.745134 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start=35944031 | |start=35944031 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000315571.6 ENST00000532490.1 AK293930 AK299186 AK075546 BC042754 | |transcript_name=ENST00000315571.6 ENST00000532490.1 AK293930 AK299186 AK075546 BC042754 | ||
|tss_cluster_detected= | |tss_cluster_detected=5 | ||
|tss_id=rfhg_136027.1 | |tss_id=rfhg_136027.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B7Z5M8 Q86YD5 | |uniprot_id=B7Z5M8 Q86YD5 | ||
}} | }} | ||
Latest revision as of 22:18, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJDB5282|PRJNA4843412|DRA013844|PRJNA401781|PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE|NETCAGE|CAGE|SLIC_CAGE | |||||||||||||
| TSS cluster detected* | 5 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2442057,EH38E1533182) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_174902 |
| Entrez ID: | 143458 |
| Nearest Unigene: | Hs.745134 |
| Nearest Refseq: | NM_174902 |
| Nearest Ensembl: | ENSG00000179241 |
| Gene Name: | low density lipoprotein receptor class A domain containing 3 |
| Gene Alias: | LRAD3 |
| Gene Type: | protein-coding |
| CpG%: | 0.173333 |
| GC%: | 0.828947 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.