TSS: Rfhg 140342.1: Difference between revisions

Latest revision as of 23:42, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_140342.1
Species:	human
Chr:	chr11

Start:	68903851
End:	68903951
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

9

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2463615,EH38E1548286)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000676228.1:0 ENST00000675615.1:0 ENST00000544541.1:0 ENST00000255078.8:0 ENST00000676173.1:0 ENST00000545146.1:0 ENST00000674955.1:0 BC041808:0 AK312565:0 L14754:0 BC025299:0 BC052278:0 BC080519:0 AB208802:0 BC105088:0 BC105090:0 BC015666:0 BC062312:0 BC000290:0
GeneID:	3508
HGNC/MGI_ID:	HGNC:5542
UniProt_ID:	A0A6Q8PGQ6 A0A6Q8PGT6 A0A6Q8PGX2 H3BRR1 P38935
Nearer transcript ids and distances:	KJ897039:2 KR712177:2 ENST00000675142.1:39 ENST00000674583.1:39 ENST00000675873.1:39 ENST00000675674.1:39 ENST00000539224.2:39 view more...

Gene_name:	immunoglobulin mu DNA binding protein 2
Gene_symbol:	IGHMBP2
Gene_synonyms:	CATF1 CMT2S HCSA HMN6 SMARD1 SMUBP2 ZFAND7
Gene_source:	HGNC:5542

TATA-Box annotation

Distance to TSS:	50
Nearest PromoterID:	NM_002180
Entrez ID:	3508
Nearest Unigene:	Hs.503048
Nearest Refseq:	NM_002180
Nearest Ensembl:	ENSG00000132740
Gene Name:	immunoglobulin mu DNA binding protein 2
Gene Alias:	CATF1\|CMT2S\|HCSA\|HMN6\|SMARD1\|SMUBP2\|ZFAND7
Gene Type:	protein-coding
CpG%:	0.160000
GC%:	0.762376
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000676228.1:0 ENST00000675615.1:0 ENST00000544541.1:0 ENST00000255078.8:0 ENST00000676173.1:0 ENST00000545146.1:0 ENST00000674955.1:0 NM_002180.3:0 BC041808:0 AK312565:0 L14754:0 BC025299:0 BC052278:0 BC080519:0 AB208802:0 BC105088:0 BC105090:0 BC015666:0 BC062312:0 BC000290:0 KJ897039:2 KR712177:2 ENST00000675142.1:39 ENST00000674583.1:39 ENST00000675873.1:39 ENST00000675674.1:39 ENST00000539224.2:39
 |annotation=promoter-TSS (NM_002180)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=immunoglobulin mu DNA binding protein 2
 |gene_id=3508
-|gene_name=IGHMBP2
+|gene_name=immunoglobulin mu DNA binding protein 2
 |gene_source=HGNC:5542
 |gene_symbol=IGHMBP2
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:5542
+|methods=NETCAGE{{!}}CAGE{{!}}C1CAGE{{!}}oligo_capping{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE
 |nearest_ensembl=ENSG00000132740
 |nearest_promoter_id=NM_002180
 |nearest_refseq=NM_002180
+|nearest_transcripts=KJ897039:2 KR712177:2 ENST00000675142.1:39 ENST00000674583.1:39 ENST00000675873.1:39 ENST00000675674.1:39 ENST00000539224.2:39
 |nearest_unigene=Hs.503048
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891
 |species=human
 |start=68903851
@@ Line 32: / Line 36: @@
 |tata_box=
 |transcript_name=ENST00000676228.1 ENST00000675615.1 ENST00000544541.1 ENST00000255078.8 ENST00000676173.1 ENST00000545146.1 ENST00000674955.1 BC041808 AK312565 L14754 BC025299 BC052278 BC080519 AB208802 BC105088 BC105090 BC015666 BC062312 BC000290
-|tss_cluster_detected=12
+|tss_cluster_detected=9
 |tss_id=rfhg_140342.1
 |tss_score=1
 |uniprot_id=A0A6Q8PGQ6 A0A6Q8PGT6 A0A6Q8PGX2 H3BRR1 P38935
 }}