TSS: Hg 101911.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-23200 |entrez_id=11217 |gc_percent=0.412935 |gene_alias=AKAP-2|AKAPKL|MISP2|PRKA2 |gene_description=A-kinase anchoring protein...") |
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{{TSSDetail | {{TSSDetail | ||
|AKAPKL= | |||
|MISP2= | |||
|PRKA2= | |||
|all_trans=ENST00000418441.1:39 | |||
|chr=chr9 | |||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=39 | |||
|distance_to_tss=-23200 | |distance_to_tss=-23200 | ||
|entrez_id= | |end=110025399 | ||
|end_of_center_position=110025398 | |||
|entrez_id=445815 | |||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
|gene_alias=AKAP-2 | |gene_alias=AKAP-2{{!}}AKAP-KL{{!}}AKAP2{{!}}AKAPKL{{!}}MISP2{{!}}PALM2{{!}}PRKA2 | ||
|gene_description= | |gene_description=PALM2-AKAP2 fusion | ||
|gene_name=AKAP2 | |gene_name=PALM2-AKAP2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000157654 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001198656 | ||
|nearest_refseq= | |nearest_refseq=NM_007203 | ||
|nearest_unigene=Hs.591908 | |nearest_unigene=Hs.591908 | ||
|num_trans=1 | |||
|species=human | |||
|start=110025396 | |||
|start_of_center_position=110025397 | |||
|strand=- | |||
|transcript_name=ENST00000418441.1 | |||
|tss_classification=no | |||
|tss_id=hg_101911.1 | |tss_id=hg_101911.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:51, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -23200 |
|---|---|
| Nearest PromoterID: | NM_001198656 |
| Entrez ID: | 445815 |
| Nearest Unigene: | Hs.591908 |
| Nearest Refseq: | NM_007203 |
| Nearest Ensembl: | ENSG00000157654 |
| Gene Name: | PALM2-AKAP2 |
| Gene Alias: | AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 |
| Gene Description: | PALM2-AKAP2 fusion |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |