TSS: Rfhg 141782.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000650630.1:23 CR749820:23 ENST00000376104.7:-36 NM_001142699.3:-36 ENST00000526147.1:-441 | |||
|annotation=promoter-TSS (NM_001142699) | |annotation=promoter-TSS (NM_001142699) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description=discs large MAGUK scaffold protein 2 | |gene_description=discs large MAGUK scaffold protein 2 | ||
|gene_id=1740 | |gene_id=1740 | ||
|gene_name= | |gene_name=MAGUK p55 scaffold protein 2; discs large MAGUK scaffold protein 2 | ||
|gene_source=HGNC:2901 HGNC:7220 | |gene_source=HGNC:2901 HGNC:7220 | ||
|gene_symbol=DLG2 MPP2 | |gene_symbol=DLG2 MPP2 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:2901 HGNC:7220 | |hgnc_mgi_id=HGNC:2901 HGNC:7220 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000150672 | |nearest_ensembl=ENSG00000150672 | ||
|nearest_promoter_id=NM_001142699 | |nearest_promoter_id=NM_001142699 | ||
|nearest_refseq=NM_001364 | |nearest_refseq=NM_001364 | ||
|nearest_transcripts=ENST00000376104.7:-36 NM_001142699.3:-36 ENST00000526147.1:-441 | |||
|nearest_unigene=Hs.367656 | |nearest_unigene=Hs.367656 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=85627293 | |start=85627293 | ||
Latest revision as of 00:10, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -30 |
|---|---|
| Nearest PromoterID: | NM_001142699 |
| Entrez ID: | 1740 |
| Nearest Unigene: | Hs.367656 |
| Nearest Refseq: | NM_001364 |
| Nearest Ensembl: | ENSG00000150672 |
| Gene Name: | MAGUK p55 scaffold protein 2; discs large MAGUK scaffold protein 2 |
| Gene Alias: | PPP1R58|PSD-93|PSD93|chapsyn-110 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.