TSS: Rfhg 142661.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000528437.5:0 ENST00000531091.5:0 ENST00000527425.5:0 ENST00000527617.1:0 ENST00000530264.1:0 BC032472:0 ENST00000527637.5:-1 NR_034078.1:-1 NR_034079.1:-1 | |||
|annotation=promoter-TSS (NR_034078) | |annotation=promoter-TSS (NR_034078) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=caspase 17, pseudogene | |gene_description=caspase 17, pseudogene | ||
|gene_id=643733 | |gene_id=643733 | ||
|gene_name= | |gene_name=caspase 4 like, pseudogene | ||
|gene_source=HGNC:53657 | |gene_source=HGNC:53657 | ||
|gene_symbol=CASP4LP | |gene_symbol=CASP4LP | ||
| Line 21: | Line 22: | ||
|gene_type=pseudo | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:53657 | |hgnc_mgi_id=HGNC:53657 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000235505 | |nearest_ensembl=ENSG00000235505 | ||
|nearest_promoter_id=NR_034079 | |nearest_promoter_id=NR_034079 | ||
|nearest_refseq=NR_034078 | |nearest_refseq=NR_034078 | ||
|nearest_transcripts=ENST00000527637.5:-1 NR_034078.1:-1 NR_034079.1:-1 | |||
|nearest_unigene=Hs.713751 | |nearest_unigene=Hs.713751 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}ENCODE | |||
|species=human | |species=human | ||
|start=104918138 | |start=104918138 | ||
Latest revision as of 00:27, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|ENCODE | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2491865,EH38E1566374) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NR_034079 |
| Entrez ID: | 643733 |
| Nearest Unigene: | Hs.713751 |
| Nearest Refseq: | NR_034078 |
| Nearest Ensembl: | ENSG00000235505 |
| Gene Name: | caspase 4 like, pseudogene |
| Gene Alias: | - |
| Gene Type: | pseudo |
| CpG%: | 0.000000 |
| GC%: | 0.351351 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.