TSS: Rfhg 143338.1: Difference between revisions

Latest revision as of 00:41, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_143338.1
Species:	human
Chr:	chr11

Start:	114061569
End:	114061593
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2499170,EH38E1571067)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK056988:30
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1074
Nearest PromoterID:	NM_001018011
Entrez ID:	7704
Nearest Unigene:	Hs.591945
Nearest Refseq:	NM_006006
Nearest Ensembl:	ENSG00000109906
Gene Name:
Gene Alias:	PLZF\|ZNF145
Gene Type:	protein-coding
CpG%:	0.041667
GC%:	0.520000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK056988:30
 |annotation=intron (NM_001018011, intron 1 of 6)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=zinc finger and BTB domain containing 16
 |gene_id=
-|gene_name=ZBTB16
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000109906
 |nearest_promoter_id=NM_001018011
 |nearest_refseq=NM_006006
+|nearest_transcripts=
 |nearest_unigene=Hs.591945
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=114061569