TSS: Hg 101915.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-37331 |entrez_id=11217 |gc_percent=0.40796 |gene_alias=AKAP-2|AKAPKL|MISP2|PRKA2 |gene_description=A-kinase anchoring protein 2 |g...") |
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{{TSSDetail | {{TSSDetail | ||
|AKAPKL= | |||
|MISP2= | |||
|PRKA2= | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=NA | |||
|distance_to_tss=-37331 | |distance_to_tss=-37331 | ||
|entrez_id= | |end=110088175 | ||
|end_of_center_position=110088170 | |||
|entrez_id=445815 | |||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
|gene_alias=AKAP-2 | |gene_alias=AKAP-2{{!}}AKAP-KL{{!}}AKAP2{{!}}AKAPKL{{!}}MISP2{{!}}PALM2{{!}}PRKA2 | ||
|gene_description= | |gene_description=PALM2-AKAP2 fusion | ||
|gene_name=AKAP2 | |gene_name=PALM2-AKAP2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000157654 | ||
|nearest_promoter_id=NM_001136562 | |nearest_promoter_id=NM_001136562 | ||
|nearest_refseq= | |nearest_refseq=NM_007203 | ||
|nearest_unigene=Hs.591908 | |nearest_unigene=Hs.591908 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=110088164 | |||
|start_of_center_position=110088169 | |||
|strand=- | |||
|tata_box=-43(ATCTCTAAAGGG,-,0.00),-34(GGGTATTTAAAC,-,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101915.1 | |tss_id=hg_101915.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 16:51, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -37331 |
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Nearest PromoterID: | NM_001136562 |
Entrez ID: | 445815 |
Nearest Unigene: | Hs.591908 |
Nearest Refseq: | NM_007203 |
Nearest Ensembl: | ENSG00000157654 |
Gene Name: | PALM2-AKAP2 |
Gene Alias: | AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 |
Gene Description: | PALM2-AKAP2 fusion |
Gene Type: | protein-coding |
CpG%: | 0 |
GC%: | 0.40796 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -43(ATCTCTAAAGGG,-,0.00),-34(GGGTATTTAAAC,-,0.00) |