TSS: Rfhg 145983.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF366028:193 MA601605:193 | |||
|annotation=promoter-TSS (NR_149145) | |annotation=promoter-TSS (NR_149145) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=CCND2 antisense RNA 1 | |gene_description=CCND2 antisense RNA 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000255920 | |nearest_ensembl=ENSG00000255920 | ||
|nearest_promoter_id=NR_125790 | |nearest_promoter_id=NR_125790 | ||
|nearest_refseq=NR_125790 | |nearest_refseq=NR_125790 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.577711 | |nearest_unigene=Hs.577711 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=4276060 | |start=4276060 | ||
Latest revision as of 01:32, 14 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2523747,EH38E1588555) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 111 |
|---|---|
| Nearest PromoterID: | NR_125790 |
| Entrez ID: | 103752584 |
| Nearest Unigene: | Hs.577711 |
| Nearest Refseq: | NR_125790 |
| Nearest Ensembl: | ENSG00000255920 |
| Gene Name: | |
| Gene Alias: | CCND2-AS2 |
| Gene Type: | ncRNA |
| CpG%: | 0.074074 |
| GC%: | 0.642857 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |