TSS: Rfhg 146028.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000536886.5:0 ENST00000544110.5:0 ENST00000398012.7:0 ENST00000535558.5:0 ENST00000442992.6:0 ENST00000228843.13:0 ENST00000352618.9:0 ENST00000538817.5:0 ENST00000544927.5:0 NM_006479.5:0 NM_001130862.2:0 AK316367:0 AF006259:0 AK300773:0 AK290428:0 AK291948:0 BC006992:0 BC005973:0 BC016330:0 AK096930:0 AL832243:0 LF207405:0 MA442982:0 CU677609:4 HQ447239:4 JF432673:4 KJ893096:4 KJ893097:4 LF365985:8 MA601562:8 ENST00000536346.5:-32 | |||
|annotation=promoter-TSS (NM_020374) | |annotation=promoter-TSS (NM_020374) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=RAD51 associated protein 1 | |gene_description=RAD51 associated protein 1 | ||
|gene_id=10635 | |gene_id=10635 | ||
|gene_name= | |gene_name=RAD51 associated protein 1 | ||
|gene_source=HGNC:16956 | |gene_source=HGNC:16956 | ||
|gene_symbol=RAD51AP1 | |gene_symbol=RAD51AP1 | ||
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16956 | |hgnc_mgi_id=HGNC:16956 | ||
|methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}RAMPAGE{{!}}oligo_capping{{!}}STRIPE-seq{{!}}C1CAGE{{!}}NETCAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2 | |||
|nearest_ensembl=ENSG00000111247 | |nearest_ensembl=ENSG00000111247 | ||
|nearest_promoter_id=NM_006479 | |nearest_promoter_id=NM_006479 | ||
|nearest_refseq=NM_006479 | |nearest_refseq=NM_006479 | ||
|nearest_transcripts=CU677609:4 HQ447239:4 JF432673:4 KJ893096:4 KJ893097:4 LF365985:8 MA601562:8 ENST00000536346.5:-32 | |||
|nearest_unigene=Hs.730696 | |nearest_unigene=Hs.730696 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}DRA000914{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA597322{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start=4538830 | |start=4538830 | ||
Latest revision as of 01:32, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DBTSS|DRA000914|PRJNA401781|PRJNA548673 |PRJNA597322|PRJDB5282|PRJNA4843412|DRA013844|PRJNA615891 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|TSS-seq|RAMPAGE|oligo_capping|STRIPE-seq |C1CAGE|NETCAGE|ReCappable-seq|SLIC_CAGE|TIF-seq2 | |||||||||||||||
| TSS cluster detected* | 15 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2523975,EH38E1588725) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_006479 |
| Entrez ID: | 10635 |
| Nearest Unigene: | Hs.730696 |
| Nearest Refseq: | NM_006479 |
| Nearest Ensembl: | ENSG00000111247 |
| Gene Name: | RAD51 associated protein 1 |
| Gene Alias: | PIR51 |
| Gene Type: | protein-coding |
| CpG%: | 0.047619 |
| GC%: | 0.518868 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.