TSS: Rfhg 147556.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000500254.6:0 NR_160307.2:0 ENST00000240636.10:1 K03204:1 BC141917:1 ENST00000545626.5:5 K03206:5 K03205:13 BC044827:15 KJ897369:38 | |||
|annotation=promoter-TSS (NM_005039) | |annotation=promoter-TSS (NM_005039) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description=proline rich protein BstNI subfamily 1 (gene/pseudogene) | |gene_description=proline rich protein BstNI subfamily 1 (gene/pseudogene) | ||
|gene_id=5542 | |gene_id=5542 | ||
|gene_name= | |gene_name=proline rich protein BstNI subfamily 1 | ||
|gene_source=HGNC:9337 | |gene_source=HGNC:9337 | ||
|gene_symbol=PRB1 | |gene_symbol=PRB1 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:9337 | |hgnc_mgi_id=HGNC:9337 | ||
|methods=TSS_database | |||
|nearest_ensembl=ENSG00000251655 | |nearest_ensembl=ENSG00000251655 | ||
|nearest_promoter_id=NR_160307 | |nearest_promoter_id=NR_160307 | ||
|nearest_refseq=NM_005039 | |nearest_refseq=NM_005039 | ||
|nearest_transcripts=ENST00000240636.10:1 K03204:1 BC141917:1 ENST00000545626.5:5 K03206:5 K03205:13 BC044827:15 KJ897369:38 | |||
|nearest_unigene=Hs.631726 | |nearest_unigene=Hs.631726 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start=11355591 | |start=11355591 | ||
Latest revision as of 02:03, 14 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NR_160307 |
| Entrez ID: | 5542 |
| Nearest Unigene: | Hs.631726 |
| Nearest Refseq: | NM_005039 |
| Nearest Ensembl: | ENSG00000251655 |
| Gene Name: | proline rich protein BstNI subfamily 1 |
| Gene Alias: | PM|PMF|PMS|PRB1L|PRB1M |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.