TSS: Rfhg 155240.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000299157.5:0 NM_201612.4:0 NM_201613.4:0 NM_153687.4:0 BC051372:0 AJ539426:0 AJ539427:0 BC107572:0 BC029415:0 AJ539425:0 BC058933:0 AK055613:0 HQ448064:12 KJ895358:12 CU691338:12 ENST00000393042.3:-143 AK123069:-143 ENST00000342502.6:-302
|annotation=promoter-TSS (NM_153687)
|annotation=promoter-TSS (NM_153687)
|ccre_category=PLS
|ccre_category=PLS
Line 15: Line 16:
|gene_description=IKBKB interacting protein
|gene_description=IKBKB interacting protein
|gene_id=121457
|gene_id=121457
|gene_name=IKBIP
|gene_name=IKBKB interacting protein
|gene_source=HGNC:26430
|gene_source=HGNC:26430
|gene_symbol=IKBIP
|gene_symbol=IKBIP
Line 21: Line 22:
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:26430
|hgnc_mgi_id=HGNC:26430
|methods=CAGE{{!}}NETCAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2
|nearest_ensembl=ENSG00000166130
|nearest_ensembl=ENSG00000166130
|nearest_promoter_id=NM_201612
|nearest_promoter_id=NM_201612
|nearest_refseq=NM_153687
|nearest_refseq=NM_153687
|nearest_transcripts=HQ448064:12 KJ895358:12 CU691338:12 ENST00000393042.3:-143 AK123069:-143 ENST00000342502.6:-302
|nearest_unigene=Hs.252543
|nearest_unigene=Hs.252543
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673{{!}}PRJNA401781{{!}}PRJNA615891
|species=human
|species=human
|start=98644714
|start=98644714
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|tata_box=
|tata_box=
|transcript_name=ENST00000299157.5 BC051372 AJ539426 AJ539427 BC107572 BC029415 AJ539425 BC058933 AK055613
|transcript_name=ENST00000299157.5 BC051372 AJ539426 AJ539427 BC107572 BC029415 AJ539425 BC058933 AK055613
|tss_cluster_detected=10
|tss_id=rfhg_155240.1
|tss_id=rfhg_155240.1
|tss_id_v3=hg_132837.1
|tss_id_v3=hg_132837.1

Latest revision as of 04:30, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_155240.1
TSS ID(Version3):hg_132837.1
Species:human
Chr:chr12
Start:98644714
End:98644811
Strand:-
Source datasetsFANTOM5|DRA000914|ENCODE|PRJNA4843412|DRA013844|PRJNA548673
|PRJNA401781|PRJNA615891
ProtocolCAGE|NETCAGE|ReCappable-seq|SLIC_CAGE|TIF-seq2
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2596279,EH38E1636660)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000299157.5:0
BC051372:0
AJ539426:0
AJ539427:0
BC107572:0
BC029415:0
AJ539425:0
BC058933:0
AK055613:0
GeneID:121457
HGNC/MGI_ID:HGNC:26430
UniProt_ID:Q3B7K3 Q70UQ0
Nearer transcript ids and distances:
  • HQ448064:12
  • KJ895358:12
  • CU691338:12
  • ENST00000393042.3:-143
  • AK123069:-143
  • ENST00000342502.6:-302
view more...
Gene_name:IKBKB interacting protein
Gene_symbol:IKBIP
Gene_synonyms:FLJ31051 IKIP
Gene_source:HGNC:26430



TATA-Box annotation

Distance to TSS:26
Nearest PromoterID:NM_201612
Entrez ID:121457
Nearest Unigene:Hs.252543
Nearest Refseq:NM_153687
Nearest Ensembl:ENSG00000166130
Gene Name:IKBKB interacting protein
Gene Alias:IKIP
Gene Type:protein-coding
CpG%:0.082474
GC%:0.693878
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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