TSS: Rfhg 163659.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AB976779:19 AB305705:34 AB977290:42 ENST00000390437.2:43 AB976960:43 AB749868:43 AB306116:43 AB306068:43 AB976893:43 AB305730:43 AB306105:43 AB976826:43 AB977466:43 AB976737:43 AB977366:43 AB976861:43 AB976968:43 AB977037:43 AB977062:43 AB977078:43 AB977090:43 AB977347:43 AB977227:43 AK301287:43 AB977084:44 AB977279:44 AB977156:53 AB749858:54 AB977189:59 AB977393:71 AB977356:72 AB977289:75 AB977226:75 AB977348:76 AB305679:78 AB977111:83 AB305739:84 AB976910:95 AB305703:101 AB360829:109 AF020651:118 S60781:130 M81774:145 DQ286431:148 GU122926:148 KT207830:148 X58746:151 AB977395:398 AB306021:418 AB977277:427 M17652:429 M17653:429 X04940:436 M27369:436 X04946:436 AF532850:444 AF532854:444 AF532847:444 AF532856:444 AF532838:444 AF532851:444 AF532837:444 AF532849:445 AY135844:445 EU340840:445 X92883:446 X92766:446 X92783:446 AF532842:446 AF532843:449 AF532852:449 AF532840:449 AF532839:449 AF532844:449 AY135853:449 AF532841:451 AF532845:451 AY135839:451 AY135835:451 AY135838:451 AY135843:451 AY135846:451 AY135842:451 AY135832:451 AY135836:451 AF532848:451 AF532853:451 AY135837:451 AY135851:451 AY135849:451 AY135833:451 AY135852:451 AY135841:451 AY135850:451 AY135840:453 AY135847:456 AB977137:456 AB977243:456 AB976957:456 AB976929:456 AB976867:456 AB977473:456 AB976827:456 AB976946:456 S82064:463 AY135834:464 AB305742:466 AY247836:469 KX074530:475 KX075470:475 KX075637:475 KX076175:475 KX076587:475 KX074975:475 KX076391:475 KX076457:475 KX076648:475 KX075747:475 KX076820:475 KX075854:475 KX076027:475 KX075082:475 KX074529:475 KX076558:475 KX074640:475 AF327017:478 S82066:487 KX074637:490 AY196320:492 KX077021:494 AY135848:495
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=olfactory receptor family 4 subfamily E member 1 (gene/pseudogene)
|gene_description=olfactory receptor family 4 subfamily E member 1 (gene/pseudogene)
|gene_id=
|gene_id=
|gene_name=OR4E1
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000276240
|nearest_ensembl=ENSG00000276240
|nearest_promoter_id=NM_001317107
|nearest_promoter_id=NM_001317107
|nearest_refseq=NM_001317107
|nearest_refseq=NM_001317107
|nearest_transcripts=AB305705:34 AB977290:42 ENST00000390437.2:43 AB976960:43 AB749868:43 AB306116:43 AB306068:43 AB976893:43 AB305730:43 AB306105:43 AB976826:43 AB977466:43 AB976737:43 AB977366:43 AB976861:43 AB976968:43 AB977037:43 AB977062:43 AB977078:43 AB977090:43 AB977347:43 AB977227:43 AK301287:43 AB977084:44 AB977279:44 AB977156:53 AB749858:54 AB977189:59 AB977393:71 AB977356:72 AB977289:75 AB977226:75 AB977348:76 AB305679:78 AB977111:83 AB305739:84 AB976910:95 AB305703:101 AB360829:109 AF020651:118 S60781:130 M81774:145 DQ286431:148 GU122926:148 KT207830:148 X58746:151 AB977395:398 AB306021:418 AB977277:427 M17652:429 M17653:429 X04940:436 M27369:436 X04946:436 AF532850:444 AF532854:444 AF532847:444 AF532856:444 AF532838:444 AF532851:444 AF532837:444 AF532849:445 AY135844:445 EU340840:445 X92883:446 X92766:446 X92783:446 AF532842:446 AF532843:449 AF532852:449 AF532840:449 AF532839:449 AF532844:449 AY135853:449 AF532841:451 AF532845:451 AY135839:451 AY135835:451 AY135838:451 AY135843:451 AY135846:451 AY135842:451 AY135832:451 AY135836:451 AF532848:451 AF532853:451 AY135837:451 AY135851:451 AY135849:451 AY135833:451 AY135852:451 AY135841:451 AY135850:451 AY135840:453 AY135847:456 AB977137:456 AB977243:456 AB976957:456 AB976929:456 AB976867:456 AB977473:456 AB976827:456 AB976946:456 S82064:463 AY135834:464 AB305742:466 AY247836:469 KX074530:475 KX075470:475 KX075637:475 KX076175:475 KX076587:475 KX074975:475 KX076391:475 KX076457:475 KX076648:475 KX075747:475 KX076820:475 KX075854:475 KX076027:475 KX075082:475 KX074529:475 KX076558:475 KX074640:475 AF327017:478 S82066:487 KX074637:490 AY196320:492 KX077021:494 AY135848:495
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=21887805
|start=21887805

Latest revision as of 07:08, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_163659.1
Species:human
Chr:chr14
Start:21887805
End:21887814
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2698739,EH38E1701831)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB976779:19
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • AB305705:34
  • AB977290:42
  • ENST00000390437.2:43
  • AB976960:43
  • AB749868:43
  • AB306116:43
  • AB306068:43
  • AB976893:43
  • AB305730:43
  • AB306105:43
  • AB976826:43
  • AB977466:43
  • AB976737:43
  • AB977366:43
  • AB976861:43
  • AB976968:43
  • AB977037:43
  • AB977062:43
  • AB977078:43
  • AB977090:43
  • AB977347:43
  • AB977227:43
  • AK301287:43
  • AB977084:44
  • AB977279:44
  • AB977156:53
  • AB749858:54
  • AB977189:59
  • AB977393:71
  • AB977356:72
  • AB977289:75
  • AB977226:75
  • AB977348:76
  • AB305679:78
  • AB977111:83
  • AB305739:84
  • AB976910:95
  • AB305703:101
  • AB360829:109
  • AF020651:118
  • S60781:130
  • M81774:145
  • DQ286431:148
  • GU122926:148
  • KT207830:148
  • X58746:151
  • AB977395:398
  • AB306021:418
  • AB977277:427
  • M17652:429
  • M17653:429
  • X04940:436
  • M27369:436
  • X04946:436
  • AF532850:444
  • AF532854:444
  • AF532847:444
  • AF532856:444
  • AF532838:444
  • AF532851:444
  • AF532837:444
  • AF532849:445
  • AY135844:445
  • EU340840:445
  • X92883:446
  • X92766:446
  • X92783:446
  • AF532842:446
  • AF532843:449
  • AF532852:449
  • AF532840:449
  • AF532839:449
  • AF532844:449
  • AY135853:449
  • AF532841:451
  • AF532845:451
  • AY135839:451
  • AY135835:451
  • AY135838:451
  • AY135843:451
  • AY135846:451
  • AY135842:451
  • AY135832:451
  • AY135836:451
  • AF532848:451
  • AF532853:451
  • AY135837:451
  • AY135851:451
  • AY135849:451
  • AY135833:451
  • AY135852:451
  • AY135841:451
  • AY135850:451
  • AY135840:453
  • AY135847:456
  • AB977137:456
  • AB977243:456
  • AB976957:456
  • AB976929:456
  • AB976867:456
  • AB977473:456
  • AB976827:456
  • AB976946:456
  • S82064:463
  • AY135834:464
  • AB305742:466
  • AY247836:469
  • KX074530:475
  • KX075470:475
  • KX075637:475
  • KX076175:475
  • KX076587:475
  • KX074975:475
  • KX076391:475
  • KX076457:475
  • KX076648:475
  • KX075747:475
  • KX076820:475
  • KX075854:475
  • KX076027:475
  • KX075082:475
  • KX074529:475
  • KX076558:475
  • KX074640:475
  • AF327017:478
  • S82066:487
  • KX074637:490
  • AY196320:492
  • KX077021:494
  • AY135848:495
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-216792
Nearest PromoterID:NM_001317107
Entrez ID:26687
Nearest Unigene:
Nearest Refseq:NM_001317107
Nearest Ensembl:ENSG00000276240
Gene Name:
Gene Alias:OR4E1P
Gene Type:protein-coding
CpG%:0.000000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "AB305705:34 AB977290:42 ENST00000390437.2:43 AB976960:43 AB749868:43 AB306116:43 AB306068:43 AB976893:43 AB305730:43 AB306105:43 AB976826:43 AB977466:43 AB976737:43 AB977366:43 AB976861:43 AB976968:43 AB977037:43 AB977062:43 AB977078:43 AB977090:43 AB977347:43 AB977227:43 AK301287:43 AB977084:44 AB977279:44 AB977156:53 AB749858:54 AB977189:59 AB977393:71 AB977356:72 AB977289:75 AB977226:75 AB977348:76 AB305679:78 AB977111:83 AB305739:84 AB976910:95 AB305703:101 AB360829:109 AF020651:118 S60781:130 M81774:145 DQ286431:148 GU122926:148 KT207830:148 X58746:151 AB977395:398 AB306021:418 AB977277:427 M17652:429 M17653:429 X04940:436 M27369:436 X04946:436 AF532850:444 AF532854:444 AF532847:444 AF532856:444 AF532838:444 AF532851:444 AF532837:444 AF532849:445 AY135844:445 EU340840:445 X92883:446 X92766:446 X92783:446 AF532842:446 AF532843:449 AF532852:449 AF532840:449 AF532839:449 AF532844:449 AY135853:449 AF532841:451 AF532845:451 AY135839:451 AY135835:451 AY135838:451 AY135843:451 AY135846:451 AY135842:451 AY135832:451 AY135836:451 AF532848:451 AF532853:451 AY135837:451 AY135851:451 AY135849:451 AY135833:451 AY135852:451 AY135841:451 AY135850:451 AY135840:453 AY135847:456 AB977137:456 AB977243:456 AB976957:456 AB976929:456 AB976867:456 AB977473:456 AB976827:456 AB976946:456 S82064:463 AY135834:464 AB305742:466 AY247836:469 KX074530:475 KX075470:475 KX075637:475 KX076175:475 KX076587:475 KX074975:475 KX076391:475 KX076457:475 KX076648:475 KX075747:475 KX076820:475 KX075854:475 KX076027:475 KX075082:475 KX074529:475 KX076558:475 KX074640:475 AF327017:478 S82066:487 KX074637:490 AY196320:492 KX077021:494 AY135848:495" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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