TSS: Rfhg 163677.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AB305695:0 AB306076:8 X58745:-10 AB305791:-12 AB305792:-12 AB306112:-12 AB749834:-12 AB306117:-12 BC070344:12 ENST00000390441.2:-13 AB360826:-13 AB976914:-13 AB977346:-13 AB977242:13 AB977082:13 AB306107:16 AB306074:22 AB306080:24 AB306017:28 AB305794:30 AB305799:30 AB977050:30 AB977329:31 AB306114:32 AB977092:36 L06881:39 L06882:39 X58159:39 AJ007774:39 D13072:39 X89809:39 X89860:39 M97706:46 M97710:59 AB977414:68 X57531:72 X58336:221 AB977460:228 JF834314:232 AB306010:236 AB305645:238 AB306055:318 KX076599:326 KX074254:330 KX076383:331 KX076607:331 KX074675:331 KX074686:331 KX076303:331 KX074733:331 KX075927:331 KX076451:331 KX076304:331 KX074980:331 KX076128:331 KX076617:331 KX076455:331 KX074375:331 KX074731:331 KX075074:331 KX074782:331 KX074394:331 KX076624:331 KX076003:331 KX074411:331 KX074440:331 KX075231:331 KX074605:332 KX076319:332 KX075859:332 KX074604:333 KX075227:333 KX075548:333 KX075434:333 KX075551:333 KX075268:333 KX075442:333 KX076087:333 KX076131:333 KX076449:333 KX075692:333 KX075566:333 KX074285:333 KX075279:333 KX075686:333 KX075839:333 KX076123:333 KX075739:333 KX076450:333 KX075697:333 KX075269:333 KX075561:333 KX077096:333 KX074500:333 KX074799:343 KX074999:343 KX074267:343 KX074298:343 KX075513:343 KX075675:343 KX077019:343 KX075808:343 KX075424:343 KX076548:343 KX077028:343 KX077131:343 KX075818:343 KX075623:343 KX074433:343 KX076805:343 KX076935:343 KX077005:343 KX075194:347 KX075945:349 AB976849:350 KX075326:352 KX074326:355 KX074351:355 KX075983:363 KX075355:369 Y15201:370 GQ502789:373 KX077010:375 M17671:392 X92785:392 KX074642:394 AF018171:400 U83989:410 M90472:412 AF018170:415 M90474:421 KX076885:422 KX075167:423 AF333586:427 KX074926:436 KX075084:436 KX076762:436 KX075287:436 KX076089:436 KX076765:436 KX074812:436 KX076616:436 MG789255:436 KX074445:436 KX074574:436 KX074776:436 KX074944:436 KX076370:436 KX076870:436 KX077061:436 KX076252:436 KX076683:436 KX074386:436 MG789457:436 KX074589:436 KX074225:436 KX075469:436 KX074883:436 KX076615:436 KX077133:436 KX075016:436 MG790981:436 KX076224:436 MG789050:436 MG789074:436 MG789088:436 MG789171:436 MG789181:436 MG789241:436 MG789270:436 MG789298:436 MG789394:436 MG789502:436 MG789528:436 MG789601:436 MG789695:436 MG789790:436 MG789914:436 MG789915:436 MG790076:436 MG790103:436 MG790198:436 MG790210:436 MG790279:436 MG790314:436 MG790382:436 MG790429:436 MG790454:436 MG790503:436 MG790546:436 MG790591:436 MG790656:436 MG790680:436 MG790850:436 MG790961:436 MG791006:436 MG791033:436 MG791072:436 MG791160:436 MG791193:436 MG791213:436 MG791504:436 KM004052:436 KM004096:436 KM004176:436 KM004218:436 KM004249:436 KM004260:436 KM004271:436 KM004343:436 KM004382:436 KM004394:436 KM004436:436 KM004462:436 KM004482:436 KM004489:436 KM004494:436 KM004848:436 KM004849:436 KM004885:436 KM004888:436 KM004923:436 KM004935:436 KM004978:436 KM004989:436 KX075789:438 U50555:445 HM568196:457 KX075889:463 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) | |gene_description=olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000276240 | |nearest_ensembl=ENSG00000276240 | ||
|nearest_promoter_id=NM_001317107 | |nearest_promoter_id=NM_001317107 | ||
|nearest_refseq=NM_001317107 | |nearest_refseq=NM_001317107 | ||
|nearest_transcripts=AB306076:8 X58745:-10 AB305791:-12 AB305792:-12 AB306112:-12 AB749834:-12 AB306117:-12 BC070344:12 ENST00000390441.2:-13 AB360826:-13 AB976914:-13 AB977346:-13 AB977242:13 AB977082:13 AB306107:16 AB306074:22 AB306080:24 AB306017:28 AB305794:30 AB305799:30 AB977050:30 AB977329:31 AB306114:32 AB977092:36 L06881:39 L06882:39 X58159:39 AJ007774:39 D13072:39 X89809:39 X89860:39 M97706:46 M97710:59 AB977414:68 X57531:72 X58336:221 AB977460:228 JF834314:232 AB306010:236 AB305645:238 AB306055:318 KX076599:326 KX074254:330 KX076383:331 KX076607:331 KX074675:331 KX074686:331 KX076303:331 KX074733:331 KX075927:331 KX076451:331 KX076304:331 KX074980:331 KX076128:331 KX076617:331 KX076455:331 KX074375:331 KX074731:331 KX075074:331 KX074782:331 KX074394:331 KX076624:331 KX076003:331 KX074411:331 KX074440:331 KX075231:331 KX074605:332 KX076319:332 KX075859:332 KX074604:333 KX075227:333 KX075548:333 KX075434:333 KX075551:333 KX075268:333 KX075442:333 KX076087:333 KX076131:333 KX076449:333 KX075692:333 KX075566:333 KX074285:333 KX075279:333 KX075686:333 KX075839:333 KX076123:333 KX075739:333 KX076450:333 KX075697:333 KX075269:333 KX075561:333 KX077096:333 KX074500:333 KX074799:343 KX074999:343 KX074267:343 KX074298:343 KX075513:343 KX075675:343 KX077019:343 KX075808:343 KX075424:343 KX076548:343 KX077028:343 KX077131:343 KX075818:343 KX075623:343 KX074433:343 KX076805:343 KX076935:343 KX077005:343 KX075194:347 KX075945:349 AB976849:350 KX075326:352 KX074326:355 KX074351:355 KX075983:363 KX075355:369 Y15201:370 GQ502789:373 KX077010:375 M17671:392 X92785:392 KX074642:394 AF018171:400 U83989:410 M90472:412 AF018170:415 M90474:421 KX076885:422 KX075167:423 AF333586:427 KX074926:436 KX075084:436 KX076762:436 KX075287:436 KX076089:436 KX076765:436 KX074812:436 KX076616:436 MG789255:436 KX074445:436 KX074574:436 KX074776:436 KX074944:436 KX076370:436 KX076870:436 KX077061:436 KX076252:436 KX076683:436 KX074386:436 MG789457:436 KX074589:436 KX074225:436 KX075469:436 KX074883:436 KX076615:436 KX077133:436 KX075016:436 MG790981:436 KX076224:436 MG789050:436 MG789074:436 MG789088:436 MG789171:436 MG789181:436 MG789241:436 MG789270:436 MG789298:436 MG789394:436 MG789502:436 MG789528:436 MG789601:436 MG789695:436 MG789790:436 MG789914:436 MG789915:436 MG790076:436 MG790103:436 MG790198:436 MG790210:436 MG790279:436 MG790314:436 MG790382:436 MG790429:436 MG790454:436 MG790503:436 MG790546:436 MG790591:436 MG790656:436 MG790680:436 MG790850:436 MG790961:436 MG791006:436 MG791033:436 MG791072:436 MG791160:436 MG791193:436 MG791213:436 MG791504:436 KM004052:436 KM004096:436 KM004176:436 KM004218:436 KM004249:436 KM004260:436 KM004271:436 KM004343:436 KM004382:436 KM004394:436 KM004436:436 KM004462:436 KM004482:436 KM004489:436 KM004494:436 KM004848:436 KM004849:436 KM004885:436 KM004888:436 KM004923:436 KM004935:436 KM004978:436 KM004989:436 KX075789:438 U50555:445 HM568196:457 KX075889:463 | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=21941141 | |start=21941141 | ||
Latest revision as of 07:08, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2698777,EH38E1701862) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | -270126 |
|---|---|
| Nearest PromoterID: | NM_001317107 |
| Entrez ID: | 26687 |
| Nearest Unigene: | |
| Nearest Refseq: | NM_001317107 |
| Nearest Ensembl: | ENSG00000276240 |
| Gene Name: | |
| Gene Alias: | OR4E1P |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "AB306076:8 X58745:-10 AB305791:-12 AB305792:-12 AB306112:-12 AB749834:-12 AB306117:-12 BC070344:12 ENST00000390441.2:-13 AB360826:-13 AB976914:-13 AB977346:-13 AB977242:13 AB977082:13 AB306107:16 AB306074:22 AB306080:24 AB306017:28 AB305794:30 AB305799:30 AB977050:30 AB977329:31 AB306114:32 AB977092:36 L06881:39 L06882:39 X58159:39 AJ007774:39 D13072:39 X89809:39 X89860:39 M97706:46 M97710:59 AB977414:68 X57531:72 X58336:221 AB977460:228 JF834314:232 AB306010:236 AB305645:238 AB306055:318 KX076599:326 KX074254:330 KX076383:331 KX076607:331 KX074675:331 KX074686:331 KX076303:331 KX074733:331 KX075927:331 KX076451:331 KX076304:331 KX074980:331 KX076128:331 KX076617:331 KX076455:331 KX074375:331 KX074731:331 KX075074:331 KX074782:331 KX074394:331 KX076624:331 KX076003:331 KX074411:331 KX074440:331 KX075231:331 KX074605:332 KX076319:332 KX075859:332 KX074604:333 KX075227:333 KX075548:333 KX075434:333 KX075551:333 KX075268:333 KX075442:333 KX076087:333 KX076131:333 KX076449:333 KX075692:333 KX075566:333 KX074285:333 KX075279:333 KX075686:333 KX075839:333 KX076123:333 KX075739:333 KX076450:333 KX075697:333 KX075269:333 KX075561:333 KX077096:333 KX074500:333 KX074799:343 KX074999:343 KX074267:343 KX074298:343 KX075513:343 KX075675:343 KX077019:343 KX075808:343 KX075424:343 KX076548:343 KX077028:343 KX077131:343 KX075818:343 KX075623:343 KX074433:343 KX076805:343 KX076935:343 KX077005:343 KX075194:347 KX075945:349 AB976849:350 KX075326:352 KX074326:355 KX074351:355 KX075983:363 KX075355:369 Y15201:370 GQ502789:373 KX077010:375 M17671:392 X92785:392 KX074642:394 AF018171:400 U83989:410 M90472:412 AF018170:415 M90474:421 KX076885:422 KX075167:423 AF333586:427 KX074926:436 KX075084:436 KX076762:436 KX075287:436 KX076089:436 KX076765:436 KX074812:436 KX076616:436 MG789255:436 KX074445:436 KX074574:436 KX074776:436 KX074944:436 KX076370:436 KX076870:436 KX077061:436 KX076252:436 KX076683:436 KX074386:436 MG789457:436 KX074589:436 KX074225:436 KX075469:436 KX074883:436 KX076615:436 KX077133:436 KX075016:436 MG790981:436 KX076224:436 MG789050:436 MG789074:436 MG789088:436 MG789171:436 MG789181:436 MG789241:436 MG789270:436 MG789298:436 MG789394:436 MG789502:436 MG789528:436 MG789601:436 MG789695:436 MG789790:436 MG789914:436 MG789915:436 MG790076:436 MG790103:436 MG790198:436 MG790210:436 MG790279:436 MG790314:436 MG790382:436 MG790429:436 MG790454:436 MG790503:436 MG790546:436 MG790591:436 MG790656:436 MG790680:436 MG790850:436 MG790961:436 MG791006:436 MG791033:436 MG791072:436 MG791160:436 MG791193:436 MG791213:436 MG791504:436 KM004052:436 KM004096:436 KM004176:436 KM004218:436 KM004249:436 KM004260:436 KM004271:436 KM004343:436 KM004382:436 KM004394:436 KM004436:436 KM004462:436 KM004482:436 KM004489:436 KM004494:436 KM004848:436 KM004849:436 KM004885:436 KM004888:436 KM004923:436 KM004935:436 KM004978:436 KM004989:436 KX075789:438 U50555:445 HM568196:457 KX075889:463" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.