TSS: Rfhg 163775.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=MA873692:31 LY596104:31 MA873693:34 LY596105:34 AB976903:39 AB976722:40 AB976945:40 AB977051:40 AB976970:40 AB977096:40 ENST00000390465.2:41 AB305773:41 AB305734:41 AB305727:41 AB305672:41 BC070337:41 AB305777:42 AB749824:42 AB976742:42 AB977310:42 AB977268:45 AB306025:46 AB749922:46 Z29614:46 AB976927:46 AB749826:47 AB306087:53 MA873694:53 LY596106:53 AB306102:54 MA873695:54 LY596107:54 AB306009:65 MA873698:68 LY596110:68 MA873699:78 LY596111:78 AB306023:80 M27375:87 AY360462:87 AY375451:87 EU427376:87 FJ795365:87 L34703:87 MN782533:87 AB977345:110 AB977376:163 AB306100:166 MA873706:374 LY596118:374 Z29579:392 Y15199:464 GQ502856:476 GQ502833:476
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=uncharacterized LOC105370401
|gene_description=uncharacterized LOC105370401
|gene_id=
|gene_id=
|gene_name=LOC105370401
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NR_148363
|nearest_promoter_id=NR_148363
|nearest_refseq=NR_148361
|nearest_refseq=NR_148361
|nearest_transcripts=MA873693:34 LY596105:34 AB976903:39 AB976722:40 AB976945:40 AB977051:40 AB976970:40 AB977096:40 ENST00000390465.2:41 AB305773:41 AB305734:41 AB305727:41 AB305672:41 BC070337:41 AB305777:42 AB749824:42 AB976742:42 AB977310:42 AB977268:45 AB306025:46 AB749922:46 Z29614:46 AB976927:46 AB749826:47 AB306087:53 MA873694:53 LY596106:53 AB306102:54 MA873695:54 LY596107:54 AB306009:65 MA873698:68 LY596110:68 MA873699:78 LY596111:78 AB306023:80 M27375:87 AY360462:87 AY375451:87 EU427376:87 FJ795365:87 L34703:87 MN782533:87 AB977345:110 AB977376:163 AB306100:166 MA873706:374 LY596118:374 Z29579:392 Y15199:464 GQ502856:476 GQ502833:476
|nearest_unigene=Hs.435144
|nearest_unigene=Hs.435144
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=22281055
|start=22281055

Latest revision as of 07:10, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_163775.1
Species:human
Chr:chr14
Start:22281055
End:22281064
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D2699020,EH38E1702049)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:MA873692:31
LY596104:31
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • MA873693:34
  • LY596105:34
  • AB976903:39
  • AB976722:40
  • AB976945:40
  • AB977051:40
  • AB976970:40
  • AB977096:40
  • ENST00000390465.2:41
  • AB305773:41
  • AB305734:41
  • AB305727:41
  • AB305672:41
  • BC070337:41
  • AB305777:42
  • AB749824:42
  • AB976742:42
  • AB977310:42
  • AB977268:45
  • AB306025:46
  • AB749922:46
  • Z29614:46
  • AB976927:46
  • AB749826:47
  • AB306087:53
  • MA873694:53
  • LY596106:53
  • AB306102:54
  • MA873695:54
  • LY596107:54
  • AB306009:65
  • MA873698:68
  • LY596110:68
  • MA873699:78
  • LY596111:78
  • AB306023:80
  • M27375:87
  • AY360462:87
  • AY375451:87
  • EU427376:87
  • FJ795365:87
  • L34703:87
  • MN782533:87
  • AB977345:110
  • AB977376:163
  • AB306100:166
  • MA873706:374
  • LY596118:374
  • Z29579:392
  • Y15199:464
  • GQ502856:476
  • GQ502833:476
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:151694
Nearest PromoterID:NR_148363
Entrez ID:105370401
Nearest Unigene:Hs.435144
Nearest Refseq:NR_148361
Nearest Ensembl:
Gene Name:
Gene Alias:-
Gene Type:ncRNA
CpG%:0.000000
GC%:0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "MA873693:34 LY596105:34 AB976903:39 AB976722:40 AB976945:40 AB977051:40 AB976970:40 AB977096:40 ENST00000390465.2:41 AB305773:41 AB305734:41 AB305727:41 AB305672:41 BC070337:41 AB305777:42 AB749824:42 AB976742:42 AB977310:42 AB977268:45 AB306025:46 AB749922:46 Z29614:46 AB976927:46 AB749826:47 AB306087:53 MA873694:53 LY596106:53 AB306102:54 MA873695:54 LY596107:54 AB306009:65 MA873698:68 LY596110:68 MA873699:78 LY596111:78 AB306023:80 M27375:87 AY360462:87 AY375451:87 EU427376:87 FJ795365:87 L34703:87 MN782533:87 AB977345:110 AB977376:163 AB306100:166 MA873706:374 LY596118:374 Z29579:392 Y15199:464 GQ502856:476 GQ502833:476" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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