TSS: Rfhg 166322.1: Difference between revisions

Latest revision as of 11:10, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_166322.1
TSS ID(Version3):	hg_143377.1
Species:	human
Chr:	chr14

Start:	55580077
End:	55580138
Strand:	-

Source datasets

Protocol

CAGE|NETCAGE|C1CAGE|oligo_capping|ReCappable-seq

TSS cluster detected^*

7

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2721466,EH38E1716255)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000554558.6 ENST00000663990.1 ENST00000412224.6 ENST00000535211.1 AK124927 JX046911 JX628584
Distance:	0
GeneID:	100129075
HGNC/MGI_ID:	HGNC:19842
UniProt_ID:

Gene_name:	KTN1-AS1
Gene_symbol:	KTN1-AS1
Gene_synonyms:	MYCLo-3
Gene_source:	HGNC:19842

TATA-Box annotation

Distance to TSS:	-15
Nearest PromoterID:	NR_027123
Entrez ID:	100129075
Nearest Unigene:	Hs.633724
Nearest Refseq:	NR_027123
Nearest Ensembl:	ENSG00000186615
Gene Name:	KTN1-AS1
Gene Alias:	C14orf33\|MYCLo-3
Gene Description:	KTN1 antisense RNA 1
Gene Type:	ncRNA
CpG%:	0.163934
GC%:	0.774194
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:19842
+|methods=CAGE{{!}}NETCAGE{{!}}C1CAGE{{!}}oligo_capping{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000186615
 |nearest_promoter_id=NR_027123
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA401781{{!}}PRJNA548673
 |species=human
 |start=55580077