TSS: Rfhg 169463.1: Difference between revisions

Latest revision as of 08:57, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_169463.1
TSS ID(Version3):	hg_141166.1 hg_141167.1
Species:	human
Chr:	chr14

Start:	93184956
End:	93185067
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

12

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2752887,EH38E1737600)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AL080118:0 BC030119:0
GeneID:	26175
HGNC/MGI_ID:	HGNC:20218
UniProt_ID:
Nearer transcript ids and distances:	ENST00000283534.4:-5 ENST00000415050.3:250 NM_001098621.4:250 view more...

Gene_name:	lysosomal enzyme trafficking factor
Gene_symbol:	LYSET
Gene_synonyms:	DKFZP564F1123 GCAF
Gene_source:	HGNC:20218

TATA-Box annotation

Distance to TSS:	37
Nearest PromoterID:	NM_015676
Entrez ID:	26175
Nearest Unigene:	Hs.275352
Nearest Refseq:	NM_015676
Nearest Ensembl:	ENSG00000153485
Gene Name:	lysosomal enzyme trafficking factor
Gene Alias:	C14orf109
Gene Type:	protein-coding
CpG%:	0.108108
GC%:	0.714286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000554824.5:0 ENST00000557048.1:0 ENST00000557574.1:0 NM_015676.3:0 AL080118:0 BC030119:0 ENST00000283534.4:-5 ENST00000415050.3:250 NM_001098621.4:250
 |annotation=promoter-TSS (NM_022151)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=transmembrane protein 251
 |gene_id=26175
-|gene_name=TMEM251
+|gene_name=lysosomal enzyme trafficking factor
 |gene_source=HGNC:20218
 |gene_symbol=LYSET
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:20218
+|methods=CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}TIF-seq2{{!}}C1CAGE{{!}}STRIPE-seq{{!}}NETCAGE
 |nearest_ensembl=ENSG00000153485
 |nearest_promoter_id=NM_015676
 |nearest_refseq=NM_015676
+|nearest_transcripts=ENST00000283534.4:-5 ENST00000415050.3:250 NM_001098621.4:250
 |nearest_unigene=Hs.275352
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJDB5282{{!}}PRJNA597322{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=93184956
@@ Line 32: / Line 36: @@
 |tata_box=
 |transcript_name=AL080118 BC030119
+|tss_cluster_detected=12
 |tss_id=rfhg_169463.1
 |tss_id_v3=hg_141166.1;hg_141167.1