TSS: Rfhg 172062.1: Difference between revisions

Latest revision as of 09:44, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_172062.1
Species:	human
Chr:	chr15

Start:	32774056
End:	32774080
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2773229,EH38E1751425)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-55203
Nearest PromoterID:	NR_109767
Entrez ID:	100131315
Nearest Unigene:	Hs.610545
Nearest Refseq:	NR_109767
Nearest Ensembl:	ENSG00000259721
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.480000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_001103184, exon 17 of 17)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=uncharacterized LOC100131315
 |gene_id=
-|gene_name=LOC100131315
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000259721
 |nearest_promoter_id=NR_109767
 |nearest_refseq=NR_109767
+|nearest_transcripts=
 |nearest_unigene=Hs.610545
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=32774056